Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0185 ATGGTGAAAATTTCTGTAGGTGGATATGATGATGGAGAAGGATCTAGCAACCCAAATCAGAAACGAAGAAGGTTGCATCATAATGATGAAACAGATGAAGAAGAAGAAGAAAATCAACAACAACAACAACCTCAACAAGAACAAGAACAAGAACAACAACCTCAACAAGAACAACAACAACAACAACATGGATTTGAGGAAGATAGAACAACTGAGGAGGATAATGAAACTGTTGAATCAAATACTAGGGATAGATCAATTTCTATTACCCTTATGGATCCTGATGTTCTTGATTGCTGCATTTGTTATGAACCCTTTAGTGCTCCTATCTTTCAGTGTGAGAATGGACATATTGCTTGCTCCAATTGCTGTTCCAGACTTGGGAACAAGTGTCCCATGTGCTCAATGCCGATTGGCTATAACCGTTGCCGAGCTATCGAGAAGGTCCTGGAATCTATTAAAATGTCATGCCTGAATACAAAATATGGTTGTAAAGAGAAGTTCAATTACAGCAAGAAAAATGACCATGAGAAGGAATGCATCTACATACCATGTTTATGCCCACATCCGGGTTGTGACTTTGTTGCTGCGTCGAAGGAGTTATCCCTCCACTTCAGCCATAGACATATAGGTTCTGCAATACCGTTTGTATACGATAAATTTCTGCCTATTGTCTTAAATATTGACCACAAAGAAATTATTCTTCAGGAGAAAAATGATGGTAGCTTGTTTATCGTTCACAATAGCCGTGAGCATCTGGGTAACATAGTCCATCTTGGTTGCATCGGCCCCAAATCGATAAAAGGTTTTCATTACGAGATCTTGGCTAGGTCTCAGGGAAGCTCTCTAATATTGACATCTTTGACAAAGATCATTCAAGGCTTCTTTCCTAATCCTCCTTCAACCGGGCGCCTTCTGATTCCATCCGATTTCTTCGGTGCTGGAACACTGAAACTGGATATTCGCATAAGGTCTCGACAACAATCCTTGACTGGACATTGA 1002 0.4012 MVKISVGGYDDGEGSSNPNQKRRRLHHNDETDEEEEENQQQQQPQQEQEQEQQPQQEQQQQQHGFEEDRTTEEDNETVESNTRDRSISITLMDPDVLDCCICYEPFSAPIFQCENGHIACSNCCSRLGNKCPMCSMPIGYNRCRAIEKVLESIKMSCLNTKYGCKEKFNYSKKNDHEKECIYIPCLCPHPGCDFVAASKELSLHFSHRHIGSAIPFVYDKFLPIVLNIDHKEIILQEKNDGSLFIVHNSREHLGNIVHLGCIGPKSIKGFHYEILARSQGSSLILTSLTKIIQGFFPNPPSTGRLLIPSDFFGAGTLKLDIRIRSRQQSLTGH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0185 333 ProSiteProfiles Zinc finger SIAH-type profile. 152 210 IPR013010 GO:0008270
Lal19g0185 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 30 329 - -
Lal19g0185 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 30 329 IPR044286 -
Lal19g0185 333 ProSiteProfiles Zinc finger RING-type profile. 99 135 IPR001841 -
Lal19g0185 333 CDD RING-HC_SIAHs 97 135 - -
Lal19g0185 333 SUPERFAMILY TRAF domain-like 152 324 - -
Lal19g0185 333 MobiDBLite consensus disorder prediction 16 31 - -
Lal19g0185 333 SUPERFAMILY RING/U-box 98 141 - -
Lal19g0185 333 MobiDBLite consensus disorder prediction 41 61 - -
Lal19g0185 333 Pfam Seven in absentia protein family 142 214 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal19g0185 333 MobiDBLite consensus disorder prediction 1 86 - -
Lal19g0185 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 205 IPR013083 -
Lal19g0185 333 MobiDBLite consensus disorder prediction 62 81 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0185 95 191 C3H Transcription Factor Family AT2G41980 40.206 6.32e-18 81.3