Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0175 ATGGAAAAAGAATCTCTACTTCCACATTTGAGTCCCATATCAGCAGAAAGTGATGCAATAAATATCCCTATTAACCCAATAGAGTTTAAAGATAAACTCATCTTTGGCAAAGATTCTTCTTCATCAGTTTCCTTTAAACCTTCTTATTCAAATCAAGAAATTCTATTTGATCCACAAAACCAACAAAAAAATATTTCTTCATGGCTTACTAACCCTAATTATGGATTCCAAAAACCCAATCTTCACAGGTCTAAAACTGCACCAGCTAGGACTATTTTAAGTGAATTAAATCAGCATCAATCTGAGGAAAGACCCCATTTTGTTACTCACAGTATTGTTCTCCAAACCTTTGTATTTCTTGTTCTTTATTTGTCATTAGGGGTAGTGATTTATTGGTTCAATAGTCATAATTTTTCATCTAGTGAAACTCACCCTATAGTGGATGGTTTATATTTTTGCATAGTAACAATGTGCACAATAGGTTATGGTGACATAACTCCTAATAGTACAACAACAAAGGTGTTTGCTATAATGTTTGTGTTAGTGGGTTTTGGTTTTATAGACATATTGTTAAGTGGGATGGTTAGTTATGTCCTTGATTTGCAAGAGAATTATTTGTTAGATGCAGTTAAGGGTAGGGATCAGAAATATCAAGGGTCATATTTAGTTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAAGTGGCATTGGCTCTAGGGGTAGTTGTCCTTTGTATTGGACTTGGTGTGGGGATTCTGCATTTTGTAGAGAAGCTTGATTGGTTGGATTCTTTTTATCTTTCGGTTATGTCAGTTACAACGGTTGGTTATGGCGATAAGGCCTTCAAGACCATTCATGGTCGTGTCTTCGCCGCAATTTGGTTGCTTGTGTCAACTCTCGCGGTGGCCCGAGCATTTCTCTATTTGGCCGAGGCCAGAATTGATAAGAGGCATAGAACCATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCAGACATTGACAATAATGGCTTTGTCAGTAAATCAGAATATGTTGTATACAAGCTGAAGGAATTGGGTAAAGTATCAGATAAGGACATTATGGAGGTTAGTGAGAAGTTTGACAGATTAGATTCTGGTAACTTTGGAAAGATAAAACTTATGGATCTCATGGAGAATCACCATTCATGA 1194 0.3685 MEKESLLPHLSPISAESDAINIPINPIEFKDKLIFGKDSSSSVSFKPSYSNQEILFDPQNQQKNISSWLTNPNYGFQKPNLHRSKTAPARTILSELNQHQSEERPHFVTHSIVLQTFVFLVLYLSLGVVIYWFNSHNFSSSETHPIVDGLYFCIVTMCTIGYGDITPNSTTTKVFAIMFVLVGFGFIDILLSGMVSYVLDLQENYLLDAVKGRDQKYQGSYLVDVKKGRMRIRMKVALALGVVVLCIGLGVGILHFVEKLDWLDSFYLSVMSVTTVGYGDKAFKTIHGRVFAAIWLLVSTLAVARAFLYLAEARIDKRHRTMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVVYKLKELGKVSDKDIMEVSEKFDRLDSGNFGKIKLMDLMENHHS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0175 397 PRINTS Two pore domain K+ channel signature 155 183 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lal19g0175 397 PRINTS Two pore domain K+ channel signature 274 283 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lal19g0175 397 SUPERFAMILY Voltage-gated potassium channels 109 198 - -
Lal19g0175 397 SUPERFAMILY Voltage-gated potassium channels 226 332 - -
Lal19g0175 397 SUPERFAMILY EF-hand 334 394 IPR011992 -
Lal19g0175 397 PANTHER TWO-PORE POTASSIUM CHANNEL 3 63 391 - -
Lal19g0175 397 Pfam Ion channel 119 198 IPR013099 -
Lal19g0175 397 Pfam Ion channel 242 311 IPR013099 -
Lal19g0175 397 Gene3D - 221 330 - -
Lal19g0175 397 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Lal19g0175 397 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 63 391 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lal19g0175 397 Gene3D - 108 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0175 Lal-Chr19 1517955 1521097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0175 10 393 Ion Channels AT4G18160 58.252 8.13e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0175 K05389 - gmx:100787238 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0175 19 1517955 1521097 Lal19g0175 19 1517955 1521097 ECH
Lal14g0973 14 12032273 12036056 Lal19g0175 19 1517955 1521097 LSH