Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0161 ATGGCCGATCAACCAATGCCAACCCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATGCGAAATTCGGTAGGAAGAGAGTGGTTGAAAATAATGAGAGTGATGATAAAGATGTTAGTAATGGAGGTTCTTTGGGTATTGTATCAAATGGCAATGTGAATCCTGTAAGAACTTCGGATAAGGCTATTTATGAGCAGTTTCAAACTCAGGGTCAGAATCTGACGCAGTCGAATGGTTTTTCACAAAACCCTGTGGATGAAAGGCCGCCGAAATCTTTGCTTCCACCTTTTGAGAGTGCAGATATGCGTGCATTAGGAGAGAGCTTAAGTCGGGATATAATTCGTGGCAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTAAAAGAGGCTGTTGTGATGCCTATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCACCATGGAAAGGCATTCTCCTTTTTGGGCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTCGCAACAGAGTGCAAGACTACATTTTTTAATATTTCAGCATCATCTGTTTTAGTGAAGGTGTTATTTGAGCTTGCAAGGCACCATGCACCCTCAACTATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAACATGAAGCAAGCAGACGGTTAAAAACTGAGCTACTTGTTCAGATGGACGGTTTGACTCGGACAAATGAGCTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCGAGAAGAGCAATGTTTGAGCAACTACTTCCTCCAGTGCCTGATGAGGAACAGATCCCGTATGATTTACTGGTAGACCGGACAGAAGGATATTCAGGCTCAGATATTCGATTGCTCTGTAAAGAGACAGCAATGCAGCCCTTGAGGCGCTTGATGTCACAACTTGAACTGGGAGACGAAGTTGTGCCCGAAGAAGAGTTGCCTAAAATTGGACCAATCATACCTGAAGATATAGAGACAGCTCTAAAGAACACAAGGCCATCTGCTCATCTCCATGCCTACAAATATGAGAAGTTCAATGATGATTATGGTAGTCAAATTCTTCAATGA 1182 0.4349 MADQPMPTRWSFQDFKLYYDAKFGRKRVVENNESDDKDVSNGGSLGIVSNGNVNPVRTSDKAIYEQFQTQGQNLTQSNGFSQNPVDERPPKSLLPPFESADMRALGESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLTRTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEQLLPPVPDEEQIPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMSQLELGDEVVPEEELPKIGPIIPEDIETALKNTRPSAHLHAYKYEKFNDDYGSQILQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0161 393 MobiDBLite consensus disorder prediction 32 53 - -
Lal19g0161 393 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 391 - -
Lal19g0161 393 Pfam AAA+ lid domain 306 340 IPR041569 -
Lal19g0161 393 PANTHER AAA DOMAIN-CONTAINING 9 391 - -
Lal19g0161 393 Gene3D - 118 383 IPR027417 -
Lal19g0161 393 SMART AAA_5 155 282 IPR003593 -
Lal19g0161 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 378 IPR027417 -
Lal19g0161 393 Gene3D - 281 369 - -
Lal19g0161 393 CDD AAA 126 280 - -
Lal19g0161 393 Pfam ATPase family associated with various cellular activities (AAA) 159 279 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0161 Lal-Chr19 1393431 1402434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0161 153 352 Calmodulin-binding Proteins AT3G56690 33.803 2.97e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0161 K07767 - gmx:100794098 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0161 19 1393431 1402434 Lal19g0161 19 1393431 1402434 ECH