Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0148 ATGTTAATAGCCTCGCAACCACCACCCGCCACCGCCTCACTCAACGCCGCCGCCTCCCTGTCCACACTCACCGCTTACGCAGTAATTGCAAAATCGAGAGAGAGAAGAATCATGAGGCCAATTTTAATGAAGGGTCACGAGAGACCATTAACATTCCTGAAGTACAACATTGATGGAGATCTCCTTTTTTCTTGTTCTAAGGACCACAACCCTACTGTTTGGTTTGCTGACAATGGCGAACGCTTGGGCACTTATCGCGGCCATAACGGAGCTGTTTGGTGCTGCGATACGGTGAAACTGTGGAGTGTGAAAACTGGTCAGCAATTATTCACTTTCAATTTTGATTCCCCTGCTAGGTCTGTCGATTTTGCCGTCGGTGATAAGCTTGCGGTTATCACTTCTGATCCGTTTATGGAATTGACTTCTGCAATCCATGTCAAGCGCATTGCTGGAGATCCTGCTGATCAGACTGGAGAATCTGTGCTTGTCATTAAGGGTCCTCATGGAAGAATTAATAGAGCTGTTTGGGGACCCCTCAACAGAACCATTATTAGTGGTGGAGAAGATGCTGTTATTCGTATTTGGGATGCTGAGACCGGAAAATTACTTCAAGAATCAGACAAAGAATCTGGCCACAAGAAGACAATTACGTCGCTTGTAAAATCTGAAGATGTCTCACATTTCCTTACTGGGTCCCTCGATAAGTCTGCTAGGCTTTGGGATACCAGAACAATGACTCTTATCAAGACATATGTGACAGAAAGCCCAGTCAATGCAGTTTCAATGTCACCCCTTCTTGGCCATGTGGTACTTGGAGGTGGCCAGGATGCATCAGCTGTTACAACTACTGATCATCGTGCTGGGAAGTTTGAAGCCAAATTCTATGATAAGATTCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGGCCAATTAATGCATTGGCCTTCAACCCTGACGGGAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCATTTTGACTCAGATTATTTCAATATCAAAATGTAG 1047 0.4489 MLIASQPPPATASLNAAASLSTLTAYAVIAKSRERRIMRPILMKGHERPLTFLKYNIDGDLLFSCSKDHNPTVWFADNGERLGTYRGHNGAVWCCDTVKLWSVKTGQQLFTFNFDSPARSVDFAVGDKLAVITSDPFMELTSAIHVKRIAGDPADQTGESVLVIKGPHGRINRAVWGPLNRTIISGGEDAVIRIWDAETGKLLQESDKESGHKKTITSLVKSEDVSHFLTGSLDKSARLWDTRTMTLIKTYVTESPVNAVSMSPLLGHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYFNIKM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0148 348 ProSitePatterns Trp-Asp (WD) repeats signature. 183 197 IPR019775 -
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 244 - -
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 201 - -
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 336 IPR001680 GO:0005515
Lal19g0148 348 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 24 347 - -
Lal19g0148 348 CDD WD40 44 336 - -
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 336 - -
Lal19g0148 348 Pfam WD domain, G-beta repeat 305 336 IPR001680 GO:0005515
Lal19g0148 348 Pfam WD domain, G-beta repeat 168 196 IPR001680 GO:0005515
Lal19g0148 348 Pfam WD domain, G-beta repeat 210 241 IPR001680 GO:0005515
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
Lal19g0148 348 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 24 347 - -
Lal19g0148 348 SUPERFAMILY WD40 repeat-like 39 336 IPR036322 GO:0005515
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 84 IPR001680 GO:0005515
Lal19g0148 348 SMART WD40_4 244 283 IPR001680 GO:0005515
Lal19g0148 348 SMART WD40_4 299 338 IPR001680 GO:0005515
Lal19g0148 348 SMART WD40_4 31 75 IPR001680 GO:0005515
Lal19g0148 348 SMART WD40_4 157 196 IPR001680 GO:0005515
Lal19g0148 348 SMART WD40_4 199 241 IPR001680 GO:0005515
Lal19g0148 348 Gene3D - 38 348 IPR015943 GO:0005515
Lal19g0148 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Lal19g0148 348 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 38 348 IPR027525 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0148 Lal-Chr19 1248334 1252977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0148 38 348 Eukaryotic Initiation Factors Gene Family AT2G46290 77.134 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0148 K03246 - gmx:100793485 587.8