Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0144 ATGGTAGCACAACCACAATCTCAACCTCAGATTCAGATTCCTTCTACACTTTCTTCACATGATGAAGCTCTCAAGAGGAACACCGATTGTGTCTACTTTCTTGCATCTCCTCTTACATGCAAAAAGGGAAATGAATGTGAGTATCGGCATAGCGAGTATGCTCGGGTTAATCCTAGGGATTGCTGGTATTGGTTAAACGGCAATTGCTTAAATCCCAAGTGCTCATTCCGTCATCCGCCTCTTGATGGCCTATTAGGAACACCACCAGCCGCTGCTGCTGGACCATCTGTGCCACCGTTACAGCATCCAACACCGTCTGCAACACATGCACCATATAATTCTAGTAAACCAGCTGTCCCTTGCATTTTCTTCCAAAAAGGACTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCACGGACCGATTCCTAATACTGGTAATAAAGCAGTTACCCAGGCCCCGATGAATAGTCAAGGAACTGAGCCTCAGAGTTTTAAGAAGCCATTTGGCGGCATTGAAAAGAATACACAAGATAGGAAAATTCCCCAAGGAAATGTTGCAAAGCCAGTTGGAGGACTTGAAGCAAAACCTGCCCAAAAAGTTGAAAGTGCTCAGCAAAAGAAAAAATTTCAGTTGAAGAAGCATGTGCTACCACCATCTACAGGATTTGAGGACGAGCCTTCAGAATTTAAGATAATAAGTGCTCCACAGGTGACCAACGAGCCCACTGTAGTCATATCTAGTCGTCTGCATCAAGCTTATGTGCCAGATGATCATAGCTTCCATAATGGTAAGGATAGTGATGAGTTTCTCAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTCAGGAATTCTGATTACTATCATGGAGAAGATGAGTTTGGAAACACGAGGGGTCAGGATGAAAGGAACTTGGACTCTTTGAGTGAGTATGATCTAGGTCATTCTGCTGATTATAATTTAGCGGCTGATATTGGCCGAGATAGATTTCGTGTGCCTCAAGGTTATGACTCATATGATAACACACAAGAGACATACATGTGGGAGCAACACAGAAAGCCCCCAGCCCATTTAGAAAGGACTCACCGCAGATCTGACAGTCCTAACAATGCTGAGGTCTCAGATCTCCGACTTCATTTATCCAAGCGCAGGAAGAGTAATGGTTTGAAATCTGTTGTGGCACATGATTGTGTTTGTGATAGCCATGGCGAGGAACATAGTCACCGACACTTCCCTAGGAAGGATTCGCTCCAGTTGCCCTCGAATGAGAGCTCCATCAGTAATCGCTTCCGAGGGAGAATCAAACTTCCAGTAAATGGTGGTGATGGTCACCCAGAGAGGGAAACTGACAGAGGAAGAGTTGGGAGCAGATTGTCATCGGGAAGGTTACCGGCCCCACATCAAGGAATGCTTCAAGATAGAATTAGAGGAAGGGTGCAAGATGGTGAGAGGAGAAACTTCAGGGATCGATCGGTGGGTAGAGAACTAATGGGGGAAAGAACCAATGGTTTTTATGTGCCAAAACGTCTTTCTGAACATAAAAATGGGAGGAGCGGCGAAAACAGGGACCAACAGTTTCTGGGAAAGAGAAAAGGTTTAAGGGAACACCAACAATCTGATGATGGTTTTCAGTTTGAAGGTCCAAAACCTCTTCGTGAAATTCTGAAGGAGAAGAGAGGAGTTGGAGCTGGTGCACCCTCCCAGAGTGGCAATTCGTCAGAGAATAAGAATACAGAAATGACCGACAACTCGGATCATAAATCTCTCACAAAGACACAAAACGGATCATTGTCCGAGACCACAGAGAATGTCAAGAACCATGAAGAAGGATCCAAGTCTCAGGCCACTGATGCAGTTGGAAAAAATGCAGTTAATATTGATTCAACTCACGGTCAATCATCCGAGAAAGGACTGATCTATGATGAAGCCATGGAGGATCAGGAATATGAAGGTGATCAAAGGGATGAAGGGGAATATGACTTTGATCAAGTTGATGAGGGGGACTATGAATATGAACAAGTTGAGGAGGGTGAAAATCCAGATCAAGAAGAATACATTGATGATGAAGATGGAGATGACTTTGCTAAGAAGATTGGTGTCATGCTTACATAA 2124 0.4426 MVAQPQSQPQIQIPSTLSSHDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPAAAAGPSVPPLQHPTPSATHAPYNSSKPAVPCIFFQKGLCLKGDRCAFLHGPIPNTGNKAVTQAPMNSQGTEPQSFKKPFGGIEKNTQDRKIPQGNVAKPVGGLEAKPAQKVESAQQKKKFQLKKHVLPPSTGFEDEPSEFKIISAPQVTNEPTVVISSRLHQAYVPDDHSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNTRGQDERNLDSLSEYDLGHSADYNLAADIGRDRFRVPQGYDSYDNTQETYMWEQHRKPPAHLERTHRRSDSPNNAEVSDLRLHLSKRRKSNGLKSVVAHDCVCDSHGEEHSHRHFPRKDSLQLPSNESSISNRFRGRIKLPVNGGDGHPERETDRGRVGSRLSSGRLPAPHQGMLQDRIRGRVQDGERRNFRDRSVGRELMGERTNGFYVPKRLSEHKNGRSGENRDQQFLGKRKGLREHQQSDDGFQFEGPKPLREILKEKRGVGAGAPSQSGNSSENKNTEMTDNSDHKSLTKTQNGSLSETTENVKNHEEGSKSQATDAVGKNAVNIDSTHGQSSEKGLIYDEAMEDQEYEGDQRDEGEYDFDQVDEGDYEYEQVEEGENPDQEEYIDDEDGDDFAKKIGVMLT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0144 707 MobiDBLite consensus disorder prediction 648 694 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 444 459 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 563 697 - -
Lal19g0144 707 SUPERFAMILY CCCH zinc finger 116 140 IPR036855 GO:0046872
Lal19g0144 707 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 12 706 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 489 527 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 406 420 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 619 639 - -
Lal19g0144 707 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Lal19g0144 707 MobiDBLite consensus disorder prediction 87 111 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 510 527 - -
Lal19g0144 707 Pfam Zinc-finger containing family 25 79 IPR041686 -
Lal19g0144 707 ProSiteProfiles Zinc finger C3H1-type profile. 115 142 IPR000571 GO:0046872
Lal19g0144 707 SMART c3hfinal6 116 141 IPR000571 GO:0046872
Lal19g0144 707 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Lal19g0144 707 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Lal19g0144 707 Pfam RNA-binding, Nab2-type zinc finger 120 140 - -
Lal19g0144 707 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 12 706 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 591 605 - -
Lal19g0144 707 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Lal19g0144 707 MobiDBLite consensus disorder prediction 406 473 - -
Lal19g0144 707 Gene3D - 16 81 - -
Lal19g0144 707 Gene3D - 107 178 - -
Lal19g0144 707 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0144 Lal-Chr19 1221684 1225382 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal19g0144 zf-CCCH_3 6.8e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0144 - - lang:109359705 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1050 14 12719923 12723659 Lal19g0144 19 1221684 1225382 LSH
Lal7g0461 7 10511967 10515580 Lal19g0144 19 1221684 1225382 LSH