Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0129 ATGATGACTCCTAACTTGAACTTAGAACCTGAAAATAATTCAGAAGAAAGAAGCCAAGAAGGTTCTAATATATCCTTGCAAGAAACACTCTATGATCTTAATCTTACTAAGGAAAGTACAACAAGTTCTATGACCCTTGACTTAACACTCAATTTCAACTCAAATGATGTTAAGTTAAAAGGTACAAGTGACACTAGCACCAATATAGGAATTGAAGCATTAGCATCAGCATTAGCAACAGAAAGTCCTAGAGTTTTCTCTTGTAACTATTGCAGGAGGAAATTCTTTAGCTCACAGGCATTAGGGGGTCATCAGAATGCACACAAAAGAGAACGGACGATGGCGAAGCGCGCGATGAGGATCGGAATGTTCAATGAGAGGTATACAAACTTGGCATCTCTACCTCTTAAAGGTTCACCTTTTAGATCACTTGGTATTGAAGCTCATTCTGCAATGCACAAGAGATATATGCAAATGCCATCAACACTAGTAAGGACTCATGATATGAAATGTGGTGCTAAGTTTGAGAGAAACCATTTTGGATCACCAATTTTCATGGCAGATGATGATGTAAGTGTATTTTGGCCTGGTAGTTTCAGAACTTGTGTTAATCTTGGACATGCTCAAACTTCAAATACTAGTTTTGTTCCAATGGCACTTCCTCCACCACAAACTTCTTCATCACCAGATCTTACTCTGAAGCTTTAG 708 0.3828 MMTPNLNLEPENNSEERSQEGSNISLQETLYDLNLTKESTTSSMTLDLTLNFNSNDVKLKGTSDTSTNIGIEALASALATESPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRIGMFNERYTNLASLPLKGSPFRSLGIEAHSAMHKRYMQMPSTLVRTHDMKCGAKFERNHFGSPIFMADDDVSVFWPGSFRTCVNLGHAQTSNTSFVPMALPPPQTSSSPDLTLKL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0129 235 Gene3D Classic Zinc Finger 62 133 - -
Lal19g0129 235 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 235 - -
Lal19g0129 235 MobiDBLite consensus disorder prediction 216 235 - -
Lal19g0129 235 SUPERFAMILY beta-beta-alpha zinc fingers 83 114 IPR036236 -
Lal19g0129 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Lal19g0129 235 PANTHER ZINC FINGER PROTEIN JAGGED 7 235 IPR045320 GO:0003700
Lal19g0129 235 MobiDBLite consensus disorder prediction 1 23 - -
Lal19g0129 235 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0129 Lal-Chr19 1091180 1091887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0129 82 235 C2H2 Transcription Factor Family AT1G66140 45.405 9.33e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal19g0129 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0129 - - gmx:100775305 308.531