Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0101 ATGAAGTCTGCTATGGCTCAAAGCAACTGGGAAGCCGATAAAATGTATGCAACTTATCGTATGCTTCGGCTTGATGTTTACATTCATGATTATCTCCTAAAAAGAAAATTACATGCCTCTGCAAAAGCGTTTATGACAGAAGGGAAAGTTGCCACAGATCCAGTTGCGATTGATGCGCCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTATTCTGGGACATATTCATTGCAAGGACAAATGACAAACATTCTGAGCCTGCTGCAGCTTACATCCAGAATATTGGTAGCAAACTGAATCCTAGTTTGCAGACCCAGCAAATGAAGGCCAGGGAACAACTTCAAATGCAACAACTGCAACTAATGCAGCAGCGCAGTGCTCAGTTACAACGAAGAGATCCTAATCATGGTGCACTTGGTGGTTCCTTAAATGCTATGAACTCCGAGGGAATGTTGGGTCAGCCGCCAGCAACTGTGTTGGCCATGAAAATGTACGAAGAACGAATGAAGCACTCTCATTCAATGGATTCCGAGGCATCTCCGGCTCTTATGGATGGCAACAGGATGGCTCTCCTCAAATCAGGAACCAGCAATCAAGGCCAGTTGGTTCAAGGCAATTCTGGGAATATGCCCACTGCATTGCAGCAAATTCAGGTGCAGACTCCTTTGTCCACTGACATCAAAGGAGAAGTTGGCTTAGGTGGCATTCCGAAGAGTTTGCCAATGGATACATCAGTCTATCGACAAGCAATTTTACAGTCCAAATCTGGGCTAAGCGGTGCAGGACTAAATCAAGGAGTTACAGGTCTTCCACTAAAAGGGTGGCCTCTAACTGGAATTGATCAACTGCGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTGACACCCCAGAGTCAATTTCTTTTGACATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTCGGGAATTCGGTTAATTATGGTGATATGGATCCACGTCGACTTAGTGGTGTTCCTCGAGGTAGCTTGAGTGCAAAGGACGGCCAGTCCACCAGGAATGAGGGATCTATGTGCTCCCAAGTTCAATCAGGCTCACCTAAGATGAAGATTGCTCAGATGCAACATTCTTCATCTCAGCAGCAGGAGCAATTGCAGCAGCAGCAGCAAATGCAGCAGAATAACAGAAAAAGAAAGCAGCCTTCTAATTCTGGAGCTGCAAATAGCACCGGTACTGGAAACACAGTTGGTCCTTCACCTAGTTCTCCAGCATCAACTCACACACCCGGGGATGGAATAAATACAGCCAGTAGCATGCAAAATGCTAACAGTGTGCAAAAGAGCTCGATGATGTATGGTGCCGATGGTACAGGAGGCCTCGCATCATCTTCAAATGTGCTGGACGACATGGACCGATTTGGAGATGTTGGTGCTTTATATGACAACGTTGAGTCTTTTTTATCAAACGATGGAGGAGATGGTGGAAATCTCTATGGAGCAATAAAGCCAAGTCCTGTTGAACAGCATAAAGATTCTTCTAAAGGCTTCACCTTTGCTGAACTTGGATGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCTTCGGATGGAAAGTTGCTTGCAAGTGCTGGACATGACAAGAAGGTTGTCCTCTGGAACATGGACAATTTGCAGACAGAGAGCACTCCTGAAGAACACAAATCGGTTATAACAGATGTCCGTTTTAGACCAAATTCCTCTCAGTTAGCGACAGCCTCAGTTGATAAATCTGTGCGATTATGGGATGCAGCCAATCCAAGCTATTGCATGCAAGAATATAGTGGACACAGTTCAGCTGTGATGTCCCTCGATTTCCACCCTAAGAAAACTGATCTTTTCTGTTTCTGTGACAATGACAATGAAATTCGCTATTGGAATATTACTTCATCCTCATGCACTCGTGTATCTAAGGTTGGTATACTGAAAGCATTCTATTGTTTCCTCTATCAATATTTTGTGTTCTTTGGTGTGGAAGAGGTTGGCCGGAAAATTGGATCTCTCTTGAATCCTGGCAAGAGTCGGGCCTTGGACCGCCTTAGGTGGGTACCTGAAAAGGGACGTCAATATAAGTATATACTTTTAGAGGGAGAACGTAGATTGAGTCACGACTTCATCATTTCTCATACTGGCATTGCTGTAGATTTGGACTACCTCTCCCGTCTGGGCAATATGAATTTGTACTACTTAGGTCGGCCTTTCGGGCATGACCGACCGTTGTATAGACCATATCTTATCTGTCAGGGAGGTAATGCACAAGTGAGGTTTCAGCCCAGAGTGGGACGTTTTCTCGGAGCCGCATCTGATAAACTAGTTTCAATTTTTGATGTGGAAACTGACAGACAAATATACTCATTCCAGGGTCATCAGGAAATAGTTAATTACATTTGCTGGGATGCAAATGGTGATATATTGGCCTCTGTGAGTCAGAATTTGGTGAAGGTTTGGTCAATGACTTCAGGAGAATGCATTCAGGAACTCATCTCCACTAACAACCAGTTTCATTCATGTGTTTTTCATCCAAGTTACTCAACTTTGTTAGTTATTGGAGGGACTTCGTGCTTAGAGCTGTGGAACATGGCTGAGAATAAAACGATGACAATTTCGGCGCACGAGAATATAATATCGGCTTTGGCACAATCTCCTGTGACCGGAATGGTTGCCTCGGCGAGTCATGACAGCTCTGTGAAGTTGTGGAAATAA 2742 0.4442 MKSAMAQSNWEADKMYATYRMLRLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSEPAAAYIQNIGSKLNPSLQTQQMKAREQLQMQQLQLMQQRSAQLQRRDPNHGALGGSLNAMNSEGMLGQPPATVLAMKMYEERMKHSHSMDSEASPALMDGNRMALLKSGTSNQGQLVQGNSGNMPTALQQIQVQTPLSTDIKGEVGLGGIPKSLPMDTSVYRQAILQSKSGLSGAGLNQGVTGLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQSQFLLTSQQQQVLAQAQAQNNLGNSVNYGDMDPRRLSGVPRGSLSAKDGQSTRNEGSMCSQVQSGSPKMKIAQMQHSSSQQQEQLQQQQQMQQNNRKRKQPSNSGAANSTGTGNTVGPSPSSPASTHTPGDGINTASSMQNANSVQKSSMMYGADGTGGLASSSNVLDDMDRFGDVGALYDNVESFLSNDGGDGGNLYGAIKPSPVEQHKDSSKGFTFAELGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNLQTESTPEEHKSVITDVRFRPNSSQLATASVDKSVRLWDAANPSYCMQEYSGHSSAVMSLDFHPKKTDLFCFCDNDNEIRYWNITSSSCTRVSKVGILKAFYCFLYQYFVFFGVEEVGRKIGSLLNPGKSRALDRLRWVPEKGRQYKYILLEGERRLSHDFIISHTGIAVDLDYLSRLGNMNLYYLGRPFGHDRPLYRPYLICQGGNAQVRFQPRVGRFLGAASDKLVSIFDVETDRQIYSFQGHQEIVNYICWDANGDILASVSQNLVKVWSMTSGECIQELISTNNQFHSCVFHPSYSTLLVIGGTSCLELWNMAENKTMTISAHENIISALAQSPVTGMVASASHDSSVKLWK 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0101 913 MobiDBLite consensus disorder prediction 342 442 - -
Lal19g0101 913 ProSiteProfiles LIS1 homology (LisH) motif profile. 24 52 IPR006594 GO:0005515
Lal19g0101 913 ProSitePatterns Trp-Asp (WD) repeats signature. 541 555 IPR019775 -
Lal19g0101 913 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 6 654 - -
Lal19g0101 913 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 759 913 - -
Lal19g0101 913 MobiDBLite consensus disorder prediction 321 442 - -
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 596 - -
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 643 - -
Lal19g0101 913 Gene3D - 502 656 IPR015943 GO:0005515
Lal19g0101 913 PRINTS G protein beta WD-40 repeat signature 541 555 IPR020472 -
Lal19g0101 913 PRINTS G protein beta WD-40 repeat signature 583 597 IPR020472 -
Lal19g0101 913 PRINTS G protein beta WD-40 repeat signature 900 913 IPR020472 -
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 596 IPR001680 GO:0005515
Lal19g0101 913 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 759 913 IPR044716 GO:0003714
Lal19g0101 913 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 6 654 IPR044716 GO:0003714
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 522 563 IPR001680 GO:0005515
Lal19g0101 913 Pfam WD domain, G-beta repeat 795 830 IPR001680 GO:0005515
Lal19g0101 913 Pfam WD domain, G-beta repeat 603 640 IPR001680 GO:0005515
Lal19g0101 913 Pfam WD domain, G-beta repeat 877 913 IPR001680 GO:0005515
Lal19g0101 913 Pfam WD domain, G-beta repeat 527 554 IPR001680 GO:0005515
Lal19g0101 913 Pfam WD domain, G-beta repeat 562 596 IPR001680 GO:0005515
Lal19g0101 913 SUPERFAMILY WD40 repeat-like 519 913 IPR036322 GO:0005515
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 913 IPR001680 GO:0005515
Lal19g0101 913 Coils Coil 369 389 - -
Lal19g0101 913 SMART WD40_4 515 554 IPR001680 GO:0005515
Lal19g0101 913 SMART WD40_4 874 913 IPR001680 GO:0005515
Lal19g0101 913 SMART WD40_4 753 789 IPR001680 GO:0005515
Lal19g0101 913 SMART WD40_4 600 640 IPR001680 GO:0005515
Lal19g0101 913 SMART WD40_4 833 872 IPR001680 GO:0005515
Lal19g0101 913 SMART WD40_4 557 596 IPR001680 GO:0005515
Lal19g0101 913 SMART WD40_4 792 830 IPR001680 GO:0005515
Lal19g0101 913 Pfam LisH 24 48 IPR006594 GO:0005515
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 881 913 - -
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 522 557 - -
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 649 IPR001680 GO:0005515
Lal19g0101 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 799 839 IPR001680 GO:0005515
Lal19g0101 913 Gene3D - 761 913 IPR015943 GO:0005515
Lal19g0101 913 CDD WD40 526 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0101 Lal-Chr19 767309 775694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0101 738 912 Miscellaneous Gene Families AT5G08390 21.311 3.55e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal19g0101 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0101 - - qsu:111995984 970.304