Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal19g0074 | ATGGGTCTAAATGGTGGTGGTTCAAAAGAGGCAGAACAATTGAGAATTGATGGAAACACTTACTTCAACAAACACCGTTTTGGTGCTGCCATCGATGCTTACACTCAGGCAATTACGCTATGCCCCAATGTTTCTGTTTATTGGACCAATCGTGCTCTCTGCCATCTTAAACGCAATGATTGGGAGAGAGTAGAAGAAGATTGCAGGAAAGCAATTCAGCTGGACAACAATTTGGTGAAGGCTCACTATATGTTGGGACTTGCATTGCTAAAGCGAGAGGAATATGCCAAGGGAATCCGAGAGTTGCAGAAGGCTTTGGATCTTGGAAGAGGTGCTGATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCTAAAGCAAAATACATAGAATGGCAATGTTCATCGACCAAGCGATCGTGGGAATTGCAAAGCTTGAAAGAAGCTTGTGAGTCCGCTCTAAAGGAAAAACAGTTTCATGATATGTCCGAAATGGAAGGATTTGTTGATGATGCTACTACTTCCCATTTGGAACAATTAGAGGCTTTAAGAGAAGTCTTCAATAAAGCTGCAGAAGATGACATACCAACTGAGATACCAGATTATCTGTGCTGTAAAATTACCCTCGATATTTTTCATGATCCGGTAATCACTCCAAGTGGACATACATATGAGAGGGCAGTGATTCTTGAGCATCTTAAGAAGGTCGGTAAATTTGACCCGTTTACGCGGCAACCCCTTCAGCCGTGGCAGCTAGTACCAAACTTGGCCATTAAGGAAGCTGTTCAGGCATTTCTGGACAAACATGGGTGGGCTTACAAGGTAGATTAA | 837 | 0.4301 | MGLNGGGSKEAEQLRIDGNTYFNKHRFGAAIDAYTQAITLCPNVSVYWTNRALCHLKRNDWERVEEDCRKAIQLDNNLVKAHYMLGLALLKREEYAKGIRELQKALDLGRGADPKGYMVEEIWQELAKAKYIEWQCSSTKRSWELQSLKEACESALKEKQFHDMSEMEGFVDDATTSHLEQLEALREVFNKAAEDDIPTEIPDYLCCKITLDIFHDPVITPSGHTYERAVILEHLKKVGKFDPFTRQPLQPWQLVPNLAIKEAVQAFLDKHGWAYKVD | 278 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal19g0074 | 278 | SMART | tpr_5 | 11 | 44 | IPR019734 | GO:0005515 | |
Lal19g0074 | 278 | SMART | tpr_5 | 79 | 112 | IPR019734 | GO:0005515 | |
Lal19g0074 | 278 | SMART | tpr_5 | 45 | 78 | IPR019734 | GO:0005515 | |
Lal19g0074 | 278 | SMART | Ubox_2 | 204 | 267 | IPR003613 | GO:0004842|GO:0016567 | |
Lal19g0074 | 278 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 8 | 277 | IPR045200 | GO:0000209|GO:0061630 | |
Lal19g0074 | 278 | SUPERFAMILY | TPR-like | 9 | 111 | IPR011990 | GO:0005515 | |
Lal19g0074 | 278 | Pfam | U-box domain | 201 | 273 | IPR003613 | GO:0004842|GO:0016567 | |
Lal19g0074 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 277 | IPR013083 | - | |
Lal19g0074 | 278 | Pfam | Tetratricopeptide repeat | 18 | 43 | IPR019734 | GO:0005515 | |
Lal19g0074 | 278 | SUPERFAMILY | RING/U-box | 194 | 275 | - | - | |
Lal19g0074 | 278 | Gene3D | Tetratricopeptide repeat domain | 6 | 141 | IPR011990 | GO:0005515 | |
Lal19g0074 | 278 | ProSiteProfiles | U-box domain profile. | 200 | 274 | IPR003613 | GO:0004842|GO:0016567 | |
Lal19g0074 | 278 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 45 | 104 | - | - | |
Lal19g0074 | 278 | ProSiteProfiles | TPR repeat profile. | 79 | 112 | IPR019734 | GO:0005515 | |
Lal19g0074 | 278 | CDD | RING-Ubox_CHIP | 201 | 267 | IPR045202 | - | |
Lal19g0074 | 278 | ProSiteProfiles | TPR repeat profile. | 11 | 44 | IPR019734 | GO:0005515 | |
Lal19g0074 | 278 | PANTHER | OS08G0113300 PROTEIN | 8 | 277 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal19g0074 | Lal-Chr19 | 575683 | 581629 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal19g0074 | 3 | 277 | U-box Gene Family | AT3G07370 | 67.273 | 3.27e-140 | 394 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal19g0074 | K09561 | - | gmx:100796519 | 474.552 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal14g0187 | 14 | 2074757 | 2080285 | Lal19g0074 | 19 | 575683 | 581629 | LSH |