Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0039 ATGTTCCGCCGAGCAACAACCCTCCTCCGTCGACCTCTTAACGCCGCCGCATCAAAGCGGTTCTCCACCGATATCCCCGTCGAATCAGCGACAGATGCGAGTTTCGTGGAGGCGTGGAAGAAAGTGAGCCCAAACATAGATCCACCAAAGACTCCATTGTCGTACTTGAAACCTCGTCCTTCGATTCCTTCTTCTCTCCCAACCAAGCTCACTGTTAATTTCGTCCTTCCTTATTCTTCTCAATTGTCTTCCAAAGAGGTGGACATGGTGATAGTGCCAGCAACAACTGGACAAATGGGTGTTCTCCCTGGACATGTTGCAACAATTGCAGAGTTGAAACCAGGAGTCCTATCTGTACATGAAGGGAATGATGTCACCAAGTATTTTGTCAGCAGCGGCTTCGCTTTCATCCATGCTAACTCCGTTGCCGATGTAATTGCTGTTGAGGCTGTATCACTGGATCAAATCGATGCAAACTTGGTCCAAAAGGGTCTTCAAGATTTTACTCAGAAGCTGAACTCAGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTCCATAGTGCTCTCAACTCAGCTCTAACAGGCTAA 603 0.476 MFRRATTLLRRPLNAAASKRFSTDIPVESATDASFVEAWKKVSPNIDPPKTPLSYLKPRPSIPSSLPTKLTVNFVLPYSSQLSSKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADVIAVEAVSLDQIDANLVQKGLQDFTQKLNSATTDLEKAEAQIGVDVHSALNSALTG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0039 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
Lal19g0039 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal19g0039 200 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 80 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal19g0039 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 1 200 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal19g0039 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal19g0039 200 Gene3D - 157 199 - -
Lal19g0039 200 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 1 200 - -
Lal19g0039 200 Coils Coil 165 185 - -
Lal19g0039 200 Gene3D - 61 156 IPR036771 -
Lal19g0039 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 142 IPR020546 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0039 Lal-Chr19 309573 312824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0039 1 200 Primary Pumps ATPases AT5G47030 71.220 4.56e-107 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0039 K02134 - gmx:100780778 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0139 14 1456465 1459941 Lal19g0039 19 309573 312824 LSH