Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0032 ATGCCTCCAAGAACGCTGAAGAGAGGTGGTTCAGCCAGTGGTGGAAAAAGGGGCGGAAGAGGAAGCAAGGTGACTCCAACAAAGTCTTCACAGAAGGAACAGCAACATGAAGAGGTTGTGAAGGTTGAAGAAGAAAAGCTTATTATTGAGGAGGAACTCAAGGTTGAAGATAAATCTGTTGTTGAGGACAAATCAATTGATATGAATCAAAAGGCTTCTGAAGCCGATGAAGAAATTAAAGCAACACATGTTTCTAATGATTTGGTGAAAAATGATGAAGAGGAGGTTAAGGAATCTATAGATGAATATGAAAAAGATGAACGATTAGATTTAGAGGATAATGATCATGAGTATGAACATGAGGAGTATGGTGGCGTTGATTACGATGAGAAGGAAATTGAACCAGATGAGGTTCATGAAATGGAAGAGGGAGTAGAGGAAGAACCAGAAGAGAATGTTGGTGAAGAAGATGGTGATACTGGTGAGGAAGAAGTTGAAGATGTGCATGATGAAATAGAGGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGCATGAGCATTCAGAGATGGCTGATGTGGAGGAAGAACATCGCGAAGTTGTAAAAGAGAGAAGGAAGCGGAAAGAGTTTGAAGTGTTTGTTGGAGGTCTAGATAAGGATGCTACTGAAGATGATCTGAAGAAGGTTTTCAGTTTTGTTGGAGTGGTTACCGAAGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAACAAGCAAAACGAGCTGTAGCTGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACTCTCTATTTGGGTAACATATGCAAGACATGGACTAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTCACAAACGTTGAGGATGTGACATTAGTAGAAGATAATAATGATAAAGGAATGAACCGTGGATTTGCATTTTTGGAATTTTCCTCCCGCTCAGAAGCTATGGATGCCTTTAAGCGACTTCAGAAGAGAGATATTGTATTTGGAGTTGATAAGCCTGTAAAGGTTTCCTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCTCTGCCTCCTTCGTGGGATGAAGATTATGTCCGGGGTCTTCTTAAAAAATATGGGGAGATTGAAAAGATTGAGCTCGCCAGGAATATGCCAGCTGCTCGCAGGATGGATTATGGATTTATTACATTTGGCACACATGATGCTGCTGTAAGGTGTGCTGAAAGCATCACCGGTACGGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGATTGTCAAGGCCACTTCAAAGAGGCCGTGGAAGACATATTAGTCGTGGAGACTACCGTCCTAGTCGCGGATCTGGATTAATGGCAAGGCCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCTCCCCGTGGGGTAAGAGGAATTGGAAGTCGTCTTCCGCCAATCAGGCCTATTAGTATGAGAGCAAGAAGTAGGCCAATGGACCCTCCAGCTAGATCCTATGATAGGAGACAGGCTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGTCGTGAGGATCCACCACCTCCAAGAAGAGTTGCTGCAGATTATGGCTCGAGAGTGGTTTCTGAAAGACGCCCATCTTACAGGGATTACCCAGCTCGTGGCCCTAGCTACTCTGATCTCCCAAGAAGTACATACCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGCTATGACCAAAGGTTTGAGAGGCCTCCTCCTCCACCTCCTGCTCCCCATCCAAGTTACCGTGAAGGACGATCTCGTGATTATGATAGTCTGTCTGGTTCAAAACGTTCTTATGCTGCCATAGATGATGTTCCTCCAAGGTATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGACTATGACTATGGTGGTAGTGCTTCACAGTATGAGGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATGGTAGAGGTAGCAGAAATTCTATTTCTAGTCAAGATTCACATGGAATGTATAGCAGTCGACATGGCGTCAGTTACAGTGGAGGCTCTTTTGGTGGTAGTGATGGTACTGGCATGTACTCGTCAAGTTATGGTGGTGATTACATCTCTCGTGGAAGTGATGTTGGTGGCAGTTCGTATTCATCAATGTATTCTGGCAGGGGTGCGGGTAGTGGTAGCAGCTACATGAGTGGTGGTGGATCTGGGTCTTATTATTGA 2358 0.4415 MPPRTLKRGGSASGGKRGGRGSKVTPTKSSQKEQQHEEVVKVEEEKLIIEEELKVEDKSVVEDKSIDMNQKASEADEEIKATHVSNDLVKNDEEEVKESIDEYEKDERLDLEDNDHEYEHEEYGGVDYDEKEIEPDEVHEMEEGVEEEPEENVGEEDGDTGEEEVEDVHDEIEGEEDDEHAGEEHEHSEMADVEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFSFVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDNNDKGMNRGFAFLEFSSRSEAMDAFKRLQKRDIVFGVDKPVKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRGLLKKYGEIEKIELARNMPAARRMDYGFITFGTHDAAVRCAESITGTELGEGDKKAKVRARLSRPLQRGRGRHISRGDYRPSRGSGLMARPSWSRPAPRSFPPPRGVRGIGSRLPPIRPISMRARSRPMDPPARSYDRRQAAPAYPKSSMKRDYGRREDPPPPRRVAADYGSRVVSERRPSYRDYPARGPSYSDLPRSTYRAAPRRGYVDDGYDQRFERPPPPPPAPHPSYREGRSRDYDSLSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYEDAYGDRLGRSSLGYGRGSRNSISSQDSHGMYSSRHGVSYSGGSFGGSDGTGMYSSSYGGDYISRGSDVGGSSYSSMYSGRGAGSGSSYMSGGGSGSYY 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0032 785 Coils Coil 86 109 - -
Lal19g0032 785 Gene3D - 136 290 IPR012677 -
Lal19g0032 785 SUPERFAMILY RNA-binding domain, RBD 289 454 IPR035979 GO:0003676
Lal19g0032 785 Coils Coil 32 52 - -
Lal19g0032 785 MobiDBLite consensus disorder prediction 756 785 - -
Lal19g0032 785 Gene3D - 377 494 IPR012677 -
Lal19g0032 785 MobiDBLite consensus disorder prediction 181 196 - -
Lal19g0032 785 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 785 - -
Lal19g0032 785 SUPERFAMILY RNA-binding domain, RBD 211 314 IPR035979 GO:0003676
Lal19g0032 785 MobiDBLite consensus disorder prediction 701 721 - -
Lal19g0032 785 MobiDBLite consensus disorder prediction 128 180 - -
Lal19g0032 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 454 IPR000504 GO:0003723
Lal19g0032 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 358 IPR000504 GO:0003723
Lal19g0032 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Lal19g0032 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Lal19g0032 785 CDD RRM_SF 292 370 - -
Lal19g0032 785 MobiDBLite consensus disorder prediction 453 670 - -
Lal19g0032 785 Gene3D - 291 373 IPR012677 -
Lal19g0032 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 469 IPR000504 GO:0003723
Lal19g0032 785 PANTHER RNA RECOGNITION MOTIF 1 785 - -
Lal19g0032 785 MobiDBLite consensus disorder prediction 554 568 - -
Lal19g0032 785 SMART rrm1_1 291 370 IPR000504 GO:0003723
Lal19g0032 785 SMART rrm1_1 388 463 IPR000504 GO:0003723
Lal19g0032 785 SMART rrm1_1 211 284 IPR000504 GO:0003723
Lal19g0032 785 MobiDBLite consensus disorder prediction 66 127 - -
Lal19g0032 785 MobiDBLite consensus disorder prediction 66 196 - -
Lal19g0032 785 MobiDBLite consensus disorder prediction 1 39 - -
Lal19g0032 785 CDD RRM_SF 389 463 - -
Lal19g0032 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 374 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0032 Lal-Chr19 246016 252055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0032 190 454 Eukaryotic Initiation Factors Gene Family AT3G16380 25.623 4.56e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0032 - - gmx:100779340 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0032 19 246016 252055 Lal19g0032 19 246016 252055 ECH
Lal14g0128 14 1266125 1273155 Lal19g0032 19 246016 252055 LSH
Lal19g0032 19 246016 252055 Lal9g1490 9 17180006 17185824 PCT