Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0028 GCATTGAGAATTGACATTGACCTCAATGAATCATCCAGCTACATTGTTGTAGGATATCGAAATAGACAATCTTATCGTATCTCGGATGAAGATAGCTCTAATTCATCAATTGGAAGATCAAATTCTTCTGGAAGTGGTGAAAGATTCATAGTTAACCGATCTAGAAGAAATGTTAGAGCTTCTTCTTATGAAGAGAATGGTAATATTGTGAATGGTAGAAGAAATGCATTCCCTGGCCCTAGGATACGTTATCCAGAACCAAACCTATCTATTGTAGTTGAGAGAAGTTCTCTATCAACATCTAATGTTCATTCTGATGCCAATTCTGAACCCCATTTCTTATCAATGTCTTCTCCTAGTCCTGAAATAAGAAGACAAATGCATTCTTTGATGGTACGTCTATGTGCTGGTGGCAATCATCAATTAGAGGGGCCCTTTGGTGAAGAAGATGTTAGTGAAGAGGAGGATGTGAATATGAACATGGGACGAACTGAGGAAGAAATTATGGCATCAATTAATCGTGAAATTTTTGAGTCAGATGATGAAGACAATGTAGAAAACAAAAAAGCATGTGGCATATGTCAGGAGGACTATGTGAATGAGGTAGAAATTGGGAGGCTGAGTTGTGAGCACAAATTTCATATGGAATGCATTAAACAGTGGCTTATGCTAAACAACCTATGCCCTTTGTGCAGACGAGTTGCACTATAA 711 0.3797 ALRIDIDLNESSSYIVVGYRNRQSYRISDEDSSNSSIGRSNSSGSGERFIVNRSRRNVRASSYEENGNIVNGRRNAFPGPRIRYPEPNLSIVVERSSLSTSNVHSDANSEPHFLSMSSPSPEIRRQMHSLMVRLCAGGNHQLEGPFGEEDVSEEEDVNMNMGRTEEEIMASINREIFESDDEDNVENKKACGICQEDYVNEVEIGRLSCEHKFHMECIKQWLMLNNLCPLCRRVAL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0028 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Lal19g0028 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 153 236 - -
Lal19g0028 236 SMART ring_2 191 231 IPR001841 -
Lal19g0028 236 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lal19g0028 236 MobiDBLite consensus disorder prediction 27 53 - -
Lal19g0028 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 153 236 IPR045191 GO:0061630
Lal19g0028 236 MobiDBLite consensus disorder prediction 28 51 - -
Lal19g0028 236 SUPERFAMILY RING/U-box 190 234 - -
Lal19g0028 236 Pfam Ring finger domain 190 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0028 Lal-Chr19 218120 220221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0028 158 236 C3H Transcription Factor Family AT2G15530 41.463 1.64e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0028 - K10635 lang:109350511 144.821