Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0019 ATGGCTACTGCAATATCTTGTGATTTTTCTTCTTTTGAATCTCTTCAACACTACCTTGATTCTCACAACATTACTATTGCCTACAATTCATTTCAAACCCCAAGTGGTTCCAATGACTTACACAAATCACCAACATGTGAAGAGGAAATGTCTACTAAGGCGCGTGTTGTGAACGCGCCACCAACATGGAATCACTACAGAGGTGTTAGGCGTAGGCCGTGGGGGAGGTTTGCAGCGGAGATAAGGGACCCAAAGAAGAATGGTGCAAGAGTTTGGCTTGGCACTTATGATACAGAAGAAGAAGCTGGTTTGGCTTATGATAGAGCTGCTTTCAAAATGCGTGGCAGGAAGGCCAAGCTCAATTTTCCTCATCTCATTGGCTCTGACATAGTGCCAGAGCCAATGAAAGTGGTCTCCGAGCCTTATTCACATCAGTGTGAGGCGTCAAATAAGAGAAAGAATGTATTGAATAAGTTAGCGCGGAATAGAAGCCAAGTAGTGCAATTGCTTGAAAAGGACAAGGATTATGATGATAGTCAGTGGTTGAATCAGTTGAATGATTATAGTCTAATCTAG 576 0.4271 MATAISCDFSSFESLQHYLDSHNITIAYNSFQTPSGSNDLHKSPTCEEEMSTKARVVNAPPTWNHYRGVRRRPWGRFAAEIRDPKKNGARVWLGTYDTEEEAGLAYDRAAFKMRGRKAKLNFPHLIGSDIVPEPMKVVSEPYSHQCEASNKRKNVLNKLARNRSQVVQLLEKDKDYDDSQWLNQLNDYSLI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0019 191 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Lal19g0019 191 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Lal19g0019 191 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Lal19g0019 191 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Lal19g0019 191 PANTHER DNA-BINDING DOMAIN 2 166 IPR044808 GO:0003700|GO:0009873
Lal19g0019 191 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Lal19g0019 191 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Lal19g0019 191 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 166 - -
Lal19g0019 191 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Lal19g0019 191 Gene3D AP2/ERF domain 64 124 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0019 Lal-Chr19 121906 122481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0019 65 128 AP2-EREBP Transcription Factor Family AT2G44840 84.375 2.66e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal19g0019 AP2 2.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0019 K09286 - gmx:100805648 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0019 19 121906 122481 Lal19g0019 19 121906 122481 ECH