Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0006 ATGGAGAATGGAAGGAAGGCATTTGAGGAGCTAGTAAGAGGGCATGAATTTGCAAAACAGCTTAGACAAATCATTAATATTGATGATAATAATAACATTAGTAATGATGATGAGTCAGTAACTGTGTTTGCTCAATATCTTGTGACCAAAGTCCTCAACTCATTTACCAACACACTCTTCCTCTTCAACAAATATCCTTCTTACCAATCCCATCATCATATAAAACTCATGGATTCTTCTTCCTCTATTACTCCTTCTAAACCTCACCATGATACCATAAAGGACAGAAGGGGGTGTTACAAGAGAAGAAGAACTGCAGAAACCACAGAAGAGGTGTCGGAAACTCCAACAATTGATAACCATCAATGGAGAAAGTATGGTCAAAAACCCATCCTAAATGCCAAATATTCAAGGAACTATTACAGGTGCAGTTACAAGTTAGATCAAGGTTGCCAAGCTACAAAACAAGTGCAGAGAGTTCAAGAGAAGCCTCCTTTGTATAAGACCATCTATTGTGGGCACCACACTTGCAAAGACCCTGATATCATACTTGATAACTCTTCTCCTTCTCATCACTCTTCCATATTCCTTATTAGCTTTGACAACACCAAACAAGATGTTCCCTTTTTATCATCATCTTTTACTTCACCATCAATCATCAAAAGGGATGAGTGCAATAGACAAGAATTCATTCCCTTTGATGATTACTTAAACTCTCCTCACCCTACTTTAGATGCTTATCCAATGCATGTTACTCAATCATCAACCCTTGAATTTGATCAAAGCTTGGATGTGATGGCGTATGGTTCTGTAGAGCATAGTGATGATCTCTTTCAGTTTATTGGATGA 849 0.3781 MENGRKAFEELVRGHEFAKQLRQIINIDDNNNISNDDESVTVFAQYLVTKVLNSFTNTLFLFNKYPSYQSHHHIKLMDSSSSITPSKPHHDTIKDRRGCYKRRRTAETTEEVSETPTIDNHQWRKYGQKPILNAKYSRNYYRCSYKLDQGCQATKQVQRVQEKPPLYKTIYCGHHTCKDPDIILDNSSPSHHSSIFLISFDNTKQDVPFLSSSFTSPSIIKRDECNRQEFIPFDDYLNSPHPTLDAYPMHVTQSSTLEFDQSLDVMAYGSVEHSDDLFQFIG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0006 282 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 260 - -
Lal19g0006 282 MobiDBLite consensus disorder prediction 88 110 - -
Lal19g0006 282 SMART WRKY_cls 117 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal19g0006 282 MobiDBLite consensus disorder prediction 79 116 - -
Lal19g0006 282 SUPERFAMILY WRKY DNA-binding domain 115 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal19g0006 282 Pfam WRKY DNA -binding domain 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal19g0006 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 260 IPR044810 GO:0003700
Lal19g0006 282 ProSiteProfiles WRKY domain profile. 119 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal19g0006 282 Gene3D WRKY domain 102 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0006 Lal-Chr19 55406 57774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0006 6 214 WRKY Transcription Factor Family AT3G56400 32.727 2.72e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal19g0006 WRKY 1.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0006 - - lja:Lj3g3v0459900.1 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1975 2 21923317 21924826 Lal19g0006 19 55406 57774 PCT
Lal9g1722 9 19443027 19444560 Lal19g0006 19 55406 57774 PCT
Lal19g0006 19 55406 57774 Lal2g1975 2 21923317 21924826 PCT
Lal19g0006 19 55406 57774 Lal9g1722 9 19443027 19444560 PCT