Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1675 ATGGGAATTTGCTGGAGTTCTTCTCCTTCTTCTTCTTCACCTCACAACCCAACAACAGTCACCACCACCGGTACCCTCAGTACAGGTACAACCTCTGCTACTACTACAACAGGGACATCATCTACATATACATATACATCTTCTACAACTACAAATACCTCTTCTTCTGGAAGTGGAAATAATAGTTCTAGTGGTAATAATAATGAATCTTATCACCCTAAAGGCCAGATCTTACCAACCGATAGTTTGAGGATCTTCACCTTTGTGGAGTTGAAAGCAGCAACCAGGAATTTCAGACCCGATACTGTACTAGGTGAGGGTGGTTTTGGAAAAGTCTATAAAGGTTGGCTGGATGAAAAGGCCACCTCCAAGAATGGATCAAGTGGAACCATCATTGCAGTCAAGAAATTAAACTCTGAAAGCTTACAAGGAATTGAGGAGTGGCAGTCAGAAGTAACATTTCTTGGTCGCCTTTCTCATCCTAACCTTGTTAAGCTGTTGGGATATTGTTTGGAGGAAACTGAGCTTCTTCTTGTCTATGAATTCATGCAAAAGGGCAGTTTGGAAAATCATCTCTTTGGAAGAGGCTCTTCTGTTCAACCACTTCTTTGGGACATCAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCCTCGCTTTCTTGCATACATCTGAGAAAGTCATTTACAGGGACTTCAAGGCCTCCAATATATTACTTGATGGGTCATATAATGCAAAGATATCCGACTTTGGATTGGCAAAATTGGGTCCTTCAGCTAGTCAATCCCATGTGACAACAAGAGTAATGGGCACATATGGCTATGCTGCTCCTGAATATGTGGCCACAGGGCATCTATATGTAAAGAGTGATGTATATGGGTTTGGAGTAGTTTTGGTTGAGATGCTAACAGCACAACGAGCGCTTGATCCAAAACGTCCAAGTGCACAGCTTAATCTAACAGACTGGGTGAAACCATACCTACATGATAGAAGAAAGTTGAAGAGCATTATGGATTCAAGATTGGAAGGAAAATATCCATCAAAAGCTGCATTTCGGATAGCTCAACTTGCATTAAAATGTCTTGCACCTGAACATAAACAGAGGCCATCAATGAATGAAGTTTTGGAGAGCTTGGAGAGAATTCAAGCTGCCAATGAGGAGCCCAAACTCCAGTCTAATCGCACAGTTGCTACCCGTCATGTGCACCACCGTTCCCCGCTTCATCCAAACCATGAAGGACGCTAG 1245 0.4273 MGICWSSSPSSSSPHNPTTVTTTGTLSTGTTSATTTTGTSSTYTYTSSTTTNTSSSGSGNNSSSGNNNESYHPKGQILPTDSLRIFTFVELKAATRNFRPDTVLGEGGFGKVYKGWLDEKATSKNGSSGTIIAVKKLNSESLQGIEEWQSEVTFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSSVQPLLWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTAQRALDPKRPSAQLNLTDWVKPYLHDRRKLKSIMDSRLEGKYPSKAAFRIAQLALKCLAPEHKQRPSMNEVLESLERIQAANEEPKLQSNRTVATRHVHHRSPLHPNHEGR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1675 414 Gene3D Transferase(Phosphotransferase) domain 1 183 404 - -
Lal18g1675 414 Pfam Protein tyrosine and serine/threonine kinase 102 378 IPR001245 GO:0004672|GO:0006468
Lal18g1675 414 CDD STKc_IRAK 104 381 - -
Lal18g1675 414 PANTHER OS01G0588500 PROTEIN-RELATED 35 395 - -
Lal18g1675 414 SUPERFAMILY Protein kinase-like (PK-like) 66 378 IPR011009 -
Lal18g1675 414 ProSitePatterns Protein kinases ATP-binding region signature. 104 136 IPR017441 GO:0005524
Lal18g1675 414 MobiDBLite consensus disorder prediction 1 75 - -
Lal18g1675 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lal18g1675 414 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 35 395 - -
Lal18g1675 414 Gene3D Phosphorylase Kinase; domain 1 82 182 - -
Lal18g1675 414 MobiDBLite consensus disorder prediction 1 76 - -
Lal18g1675 414 MobiDBLite consensus disorder prediction 379 414 - -
Lal18g1675 414 ProSiteProfiles Protein kinase domain profile. 98 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1675 Lal-Chr18 17966824 17969491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1675 82 399 Receptor kinase-like Gene Family AT4G02010 50.154 4.81e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal18g1675 PK_Tyr_Ser-Thr 9.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1675 - - vun:114194495 579.326