Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1673 ATGGAATATGATGCCCTAGTTAACAATAGTGGTGTGTTTGATGAAGCAATAGATTTGACAGATGAGTTGTTGGTAGAAGGGTGCTGGGTGGAAACAACAGGTGAAGGTGGAGGAGACCATAATCAGCTGCACCAAGATCTTGAATTAGTAAATGGAGGATCATTGGTGGGTAAGAGATTGTGGATTGAGCCATCAACAACAACAACATCATCATCATTACCAGTGAAAGAAAGATTAGTGGTTGCTGTTGAATACTTGAAAGAGTACTACACTAAGAACACCAATATCCTCATTCAGATATGGGTCCCCCAACGCAGCAACATCAGATCATCACCCTTTGAGTTTAATCATGATCACTTGGTCACTCCAACAAATGTTAAGTTCTTTAGAAGTCAGGATTACCCATTGCAGCAGTACGATGTACGTGGATGTTTGACCCTTCCTGTCTTCCAACGTGGCACTGCTACTTGTCTTGGTGTCCTTCAGATTACTACTACTACTAACCATAACTCATCATCCTTCATCACTTATCATCGCCCTCAACAACTTATTCACAACAATCTCTCCTTTCCTCTTGACCATGCTGTTGTTGATTTTAGGAGTTGTCAGAACTTCATTCCAACTTCTTCTGTGAAGGTATATGATGAGTTATACCAAGCAGCACTGAATGAGATTGTACAAGTGTTGACATCAGTGTGCAAGACACACAATTTGCCTTTAGCACTAACATGGGCACCGTGCATCCAGCAAGGTAAGTGTGGTTGTGGCCATTCAACAACTGATCAGAATTATGTGTATTGTGTATCCACCGTAGATTCAGCATGTTTTGTGGTAGATCTAGACATCCTTGGATTCCAAGAAGCGTGCTCACAGTATCACCTCTTCAGAGGCCAAGGAATAGTTGGAACAGCATTCACTACAGCCAAACCTTGTTTTGCTATTGACATCACTGCTTTTAGCAAAGCTGAGTATCCTCTTTCTCACCATGCAAACATGTTTGGCTTACATGCTGCTTTTGCCATTCCACTTAGGTGTGTCTACACTGGTTCTGCTGATTTTGTTTTGGAGTTTTTCCTCCCAAAGGACTGCCATGACCCTGAAGAGCAAAGGCACATGTTAAATTCATTGTCCATGCTGGTACAACAAGGTTGCCGAAGCTTGCATGTTGTGACTGAGGATGAATTCACCTTGCCACTACCGTCACCACCACCACCACCACCTCACAACAAAGAAGAAGCTCATATGATTGAGAAATTATTATTTGCATCTACTCTGTCGTCATCACAAGTAGAATCATCATCATGGATTGCACATATGATGGAAGCACAACAGAAGGGGAAAGGTGTGTCGGTGTCATTGGAGTATCAGCTTGATGAAGAGCCAAAAGAGGAGTTCAAAGTGACAACAAACTGGGATGGAAGTAATGAGCTGCTGCAGGCACAGACAACACAAGTGTTTTCAGAATTTACTGAGCAAAGTTCAGGGTCAAGATCAAGAGCAAGTACTGTAGAGCTTGGTACTGGAGGTGGAGAAGAATGTTATTCATTTAATAGAAAGCATTCATCAACAACAACAATAACTAATTCAGGTGGTGGGAGAAAGACAGGAGATAAGAGGAGAACAAAGGCAGAGAAGACTATCAGTTTGTCAGTTCTCAGACAATACTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAGCATTGGAGTATGTCCTACAACTCTAAAAAGGATATGCAGACAGCATGGGATAACAAGGTGGCCATCAAGGAAAATAAAGAAGGTAGGGCACTCTTTAAAGAAACTTCAACTGGTGATTGATTCAGTGCAGGGTGCTGAGGGTGCCATTCAGATTGGCTCATTCTACACCAGTTTTCCAGAGTTGTGTTCTGCTAGTGCCCGTTCTGAGTCATCCAACAAAATGCATACTGATCATTCCAAGACTGAGTGTGACAATAATAACAACTACAATGGATTTTATAATGGAGATGTTTGCAGTCAGAACTTTGCAGCTTCAACTTTGATCAACAACAGTAATAACAATGGAGGAGTTGATGTTCTAATGATGACAGAAAGCTCCCCTGATCATCATCATCATGCATTTCTCAACAGAGAGTTGTCAATCCAAGAGGATACAAAATTATACTTCACAAGATCCAAGGCTGCTCCCAGTGGGTGGAGGGGTGCACTTAGAGTAAAAGCTACTTTTGTAGATGAAAAAATCAGATTTAGCTTGCAACCAAATTGGGGGTTCAGAGATTTGCAGGTTGAGATAACAAAACGTTTCAACCTAAATGATGTGAGGAACATTGATCTAAAGTATTTGGATGATGAAGGGGAGTGGGTTCTATTAGCATGTGATGCTGATCTTAAGGAATGTAAAGACTTGCATAGGTCATCACAAGGAAGGACAATTAGACTCTCACTCTTTCAAGCTTCTCTTGTTCATAATAATAACAATCATCTTCCAAATACATTTGGTGGTGGTAGAAGCACAAGTCCATCTTCATCATCCTAG 2514 0.4141 MEYDALVNNSGVFDEAIDLTDELLVEGCWVETTGEGGGDHNQLHQDLELVNGGSLVGKRLWIEPSTTTTSSSLPVKERLVVAVEYLKEYYTKNTNILIQIWVPQRSNIRSSPFEFNHDHLVTPTNVKFFRSQDYPLQQYDVRGCLTLPVFQRGTATCLGVLQITTTTNHNSSSFITYHRPQQLIHNNLSFPLDHAVVDFRSCQNFIPTSSVKVYDELYQAALNEIVQVLTSVCKTHNLPLALTWAPCIQQGKCGCGHSTTDQNYVYCVSTVDSACFVVDLDILGFQEACSQYHLFRGQGIVGTAFTTAKPCFAIDITAFSKAEYPLSHHANMFGLHAAFAIPLRCVYTGSADFVLEFFLPKDCHDPEEQRHMLNSLSMLVQQGCRSLHVVTEDEFTLPLPSPPPPPPHNKEEAHMIEKLLFASTLSSSQVESSSWIAHMMEAQQKGKGVSVSLEYQLDEEPKEEFKVTTNWDGSNELLQAQTTQVFSEFTEQSSGSRSRASTVELGTGGGEECYSFNRKHSSTTTITNSGGGRKTGDKRRTKAEKTISLSVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYTSFPELCSASARSESSNKMHTDHSKTECDNNNNYNGFYNGDVCSQNFAASTLINNSNNNGGVDVLMMTESSPDHHHHAFLNRELSIQEDTKLYFTRSKAAPSGWRGALRVKATFVDEKIRFSLQPNWGFRDLQVEITKRFNLNDVRNIDLKYLDDEGEWVLLACDADLKECKDLHRSSQGRTIRLSLFQASLVHNNNNHLPNTFGGGRSTSPSSSS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1673 837 PANTHER PROTEIN NLP2 124 816 - -
Lal18g1673 837 PANTHER PROTEIN NLP2 24 106 - -
Lal18g1673 837 PANTHER PROTEIN NLP8 24 106 IPR045012 GO:0003700
Lal18g1673 837 PANTHER PROTEIN NLP8 124 816 IPR045012 GO:0003700
Lal18g1673 837 SMART PB1_new 728 811 IPR000270 GO:0005515
Lal18g1673 837 Gene3D - 728 811 - -
Lal18g1673 837 Pfam RWP-RK domain 546 594 IPR003035 -
Lal18g1673 837 ProSiteProfiles RWP-RK domain profile. 533 614 IPR003035 -
Lal18g1673 837 Pfam PB1 domain 729 810 IPR000270 GO:0005515
Lal18g1673 837 MobiDBLite consensus disorder prediction 521 542 - -
Lal18g1673 837 SUPERFAMILY CAD & PB1 domains 720 811 - -
Lal18g1673 837 CDD PB1_NLP 729 810 IPR034891 -
Lal18g1673 837 ProSiteProfiles PB1 domain profile. 728 811 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1673 Lal-Chr18 17935066 17938726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1673 11 826 NLP Transcription Factor Family AT2G17150 39.407 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal18g1673 PB1 8.6e-17 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1673 18 17935066 17938726 Lal6g0015 6 113802 117178 LSH