Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1669 ATGGAAAACAGAGCTGAGATTGAAATTCAAAGTAATTTTGTGTCTGATTTTGAAATTCAGCCTCAGCCTCAGCCTCAGACATGTATTGTTGGAAATGAAAAAGGTGAGAAGAAGTGTGAGGCCAGAAAAGCTGCACTATCCTCTCTGCAAATACCAGCATGGTCACTATCTTCTTTTGCAAACACCGATGGTCCTACACTCTCAACAACTCCTGCTTCTACAAGGCCAACTTCTGCCAAATTCATTCAAAGGATCTTCACCTCTGATACTGAAACAACCTCACTTCCTCAAACTCAAAGGATCTTCACCTCTGATACTGAAACAACACTTCCTCAAAGGATCTTCACCTCTGATACTGAAACAACACTTCTTATCATTCCATCTCATTCTCCTTTCGATAACCCTTCAACTTCAACCTCACTCTTCTCTTCCTCAACAAAACCTCCACATTCACTACCAGTTACTCCAATTACAACTTCAGCTTCACAGAATCTACATGGATCACACCTACACTCTGCTTCTCCTTCAACTACAATGGAAGTTATGCACCATATGACTCGATCATTTTCAGTTCCGCTTAATGCCAAATCTACTAATGTAAGGCCAACAGATTCTAGGTGCTTGATTCGTGTAATTTCAGTTAGACCACATCTTCAAACTGTTGATGCTACTTCAACTGATGATGCTTCAGTTTCGGAGATTGCCATTGAAGATACCACCGAGGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTCTGGTGGAGCTTGGGGAAGGAGGTAATACTCTTAAGATGGAGTGCAGTTGCAAAGGTGATCTTGCACTTGCTCACAAAGACTGTGCAGTGAAGTGGTTTAGTATTAAAGGAAATAGGACCTGTGATGTCTGCAAGCAGGATGTCCAAAACCTTCCAGTTACGCTGTTGAAAATTTATAATCCTCAAAATTCTGCTAGGCAGCCATCATTTGTGCAACTGTCACAACAGGGGGACACAAATTATTACAGGCAAGTTCAATTATTTCAATGTGCTACGATGGATCTGGCGGGATATACCTGTACTCATCTTGGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGCAACTACTGCTTACCAGGTATCAGATATGGGACCCCGCGCTCTTGCCATATCATTACCTTTCGCCTGTATTTTAGGTTTCCTTTCATCCATCGTTGCGTCAGCCACCGTGAACAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTCATCCTGTTTGCTCATGTATTTTATACTATTCTTAATGTTAATGCAGTTCTCTCTGTTCTACTTTCCTCATTCACTGGATTTGGGATAACTATAAGTGTGAATTCTCTGCTGATGGAATATATTAGATGGAAAGGAAGTAGGGAGATTCAAGCTTACAATGATGATATTATGAGGAGAGAGCAAGAGCGCCGTGATAATGTATAA 1464 0.4119 MENRAEIEIQSNFVSDFEIQPQPQPQTCIVGNEKGEKKCEARKAALSSLQIPAWSLSSFANTDGPTLSTTPASTRPTSAKFIQRIFTSDTETTSLPQTQRIFTSDTETTLPQRIFTSDTETTLLIIPSHSPFDNPSTSTSLFSSSTKPPHSLPVTPITTSASQNLHGSHLHSASPSTTMEVMHHMTRSFSVPLNAKSTNVRPTDSRCLIRVISVRPHLQTVDATSTDDASVSEIAIEDTTEDIPEEEAVCRICLVELGEGGNTLKMECSCKGDLALAHKDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQNSARQPSFVQLSQQGDTNYYRQVQLFQCATMDLAGYTCTHLGQHACLLLLSRATTAYQVSDMGPRALAISLPFACILGFLSSIVASATVNRSYIWAYACFQFAILILFAHVFYTILNVNAVLSVLLSSFTGFGITISVNSLLMEYIRWKGSREIQAYNDDIMRREQERRDNV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1669 487 MobiDBLite consensus disorder prediction 133 152 - -
Lal18g1669 487 CDD RING_CH-C4HC3_MARCH 250 298 - -
Lal18g1669 487 SUPERFAMILY RING/U-box 246 301 - -
Lal18g1669 487 SMART ringv_2 249 298 IPR011016 GO:0008270
Lal18g1669 487 PANTHER OS02G0165000 PROTEIN 38 476 - -
Lal18g1669 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 305 IPR013083 -
Lal18g1669 487 ProSiteProfiles Zinc finger RING-CH-type profile. 242 304 IPR011016 GO:0008270
Lal18g1669 487 PANTHER OS02G0165000 PROTEIN 38 476 - -
Lal18g1669 487 Pfam RING-variant domain 250 297 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1669 Lal-Chr18 17907379 17912498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1669 244 304 C3H Transcription Factor Family AT2G37950 46.875 8.09e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1669 - - gmx:100789461 457.988