Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1660 ATGGCCCAATCCACTGACTCCAACTCAGTCATGAGCCGTCGTCTCCCATGCGACTCTGACGGCGTTTGCATGGTTTGCAAGACGAAGCCAACCACCGTGACTGACAGCCTTACCTGCAACACATGTATCACTCCTTGGCACCTTCCTTGTCTCCCTGAATCAGATCGTCCTCCTACCCTCTCCGATGCTCATAATTGGTGTTGTCCTGACTGCGCTGCTCCCACCACCGTCACTCAGCCTCTCCCTCCACCTTCCTCCGATGATCCTTCTTCTCATCTTATGGCTTCTATTCGTGCGATCCAGGATGATGATTCTCTTACTGATCAACAAAAGGCTAAGAAGCGTATGGATATCATGCTCGCTTCCTCAAACATCTCTCATAATTCCAATAACCCCTCTTCTTCTTCTTCTTCTTCTGTTCCTCCTGCTTTCGATATCTTTGATGGAACCCTTAACTGCTCTATTTGTATGCAGCTACCCGAGAGACCTGTCACGACACCTTGTGGTCATAACTTTTGCTTGAAGTGTTTTCAAAAGTGTTTCTCACAAGGCAATCGAAAATGTGCTAATTGCCGTGGCGCTATACCACCCAAGATGGTCTCCAATCCTCGCATCAACTCCCAGCTTGCCATTGCCATCAGGTTGGCAAAGATGGCCAGATCTGGCTGTGCTGTTCCTGGCGGTGTTCCTAAGGTCTACCATTTTATCCACAACCAAGACCGTCCTGACACCGCTTTCACCACCGAGAGAGCAAAGAAGACTGGATTGGCAAATGCCTGCAGTGGGAAGATCTTTGTCACCGTTCCCCCGGACCACTTTGGACCCATCCCTGCAGAGAATGACCCAACAAGGAACCGTGGTGTTCTTGTGGGGGAGACTTGGATGAACAGGATGGATTGTAGACAGTGGGGTGCTCATCTTCCCCATGTTGCTGGCATTGCTGGCCAGAGTGCTTATGGTGCTCAGTCTGTTGCTCTCTCTGGAGGCTATGTTGATGATGAGGACCATGGTGAGTGGTTCCTCTACACTGGCAGTGGAGGAAGAGATCTTAGTGGCAACAAACGCACAAACAAGAACCAGTCATTTGATCAAAAGTTTGAAAATATGAATGAGGCTCTCAGAGTAAGTTGTCTAAAGGGCTATCCAGTGCGTGTTGTAAGGTCCTCCAAGGAGAAGCGATCTGCATATGCACCAGATGAAGGTGTTAGATACGATGGTGTCTACAGAATAGAGAAGTGCTGGCGCAAAGTGGGACAACAGGGTTGCAAGGTCTGTCGGTATTTATTTGTGAGATGTGACAATGAGCCTGCACCATGGACAAGTGATGACCATGGAGATAAACCACGCGCACTGCCTAAAATTAAGGAGCTGAAGGGTGCAGTTGACTTAACTGAAAGGAAGGCAGCTCCATCATGGGATTATGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAGGCCTCCACCAGAAAGCAGGAAGTCAGCAGGCACTGTAAGCCCTGTGAAAGGACAAATAAGAGCGGTTAAACGAAAAGTGAAAGTTGCGTCTGTAAAAGAAAAACTCCTGAAAGAGTTTGCTTGCCAAATCTGTCGCAAGGTGATGTGTAACCCTCTTACAACACCCTGCGCTCATAACTTCTGTAAAGCCTGTTTGGAGGGAGCATTTTCTGGCCAAAGTTTCATCAGAGAAAGGGCCTCCCAAAGTGGACGTTCATTACGTGCACAAAAGAACATCATGAGATGCCCATCTTGCCAAAACGACATAGCTGAGTATTTGCAGAACCCACAGGTTAACAGGCAAATGATGGGTATCATAGAATCACTCCAGTGCGAGGCTGAACAGTTGTCGGAGAATTCTTCGGAGTCAAGTGACAAAAATGATGAAAATCAGAAGAATGAAAGTGAAGTTCTGAAACCTTGTGAGGAGGATGATGATGATGATAATTATGATGATAATGATGATGGTAATGATGATGATTCAAGTGAGAAGGTCCTGGAGGAGATTAAGGACAATGATCTGAACTTGCCACAGAAGCGGAGGAAAGTGGCTAAAGGGGCAGTTGTGACTATGGAAGAGGAACACATTGATGAAGTTGAACAAGACAGTGTGAAGGCTTGCAATTAA 2121 0.4724 MAQSTDSNSVMSRRLPCDSDGVCMVCKTKPTTVTDSLTCNTCITPWHLPCLPESDRPPTLSDAHNWCCPDCAAPTTVTQPLPPPSSDDPSSHLMASIRAIQDDDSLTDQQKAKKRMDIMLASSNISHNSNNPSSSSSSSVPPAFDIFDGTLNCSICMQLPERPVTTPCGHNFCLKCFQKCFSQGNRKCANCRGAIPPKMVSNPRINSQLAIAIRLAKMARSGCAVPGGVPKVYHFIHNQDRPDTAFTTERAKKTGLANACSGKIFVTVPPDHFGPIPAENDPTRNRGVLVGETWMNRMDCRQWGAHLPHVAGIAGQSAYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQKFENMNEALRVSCLKGYPVRVVRSSKEKRSAYAPDEGVRYDGVYRIEKCWRKVGQQGCKVCRYLFVRCDNEPAPWTSDDHGDKPRALPKIKELKGAVDLTERKAAPSWDYDEEKGCWLWKRPPPESRKSAGTVSPVKGQIRAVKRKVKVASVKEKLLKEFACQICRKVMCNPLTTPCAHNFCKACLEGAFSGQSFIRERASQSGRSLRAQKNIMRCPSCQNDIAEYLQNPQVNRQMMGIIESLQCEAEQLSENSSESSDKNDENQKNESEVLKPCEEDDDDDNYDDNDDGNDDDSSEKVLEEIKDNDLNLPQKRRKVAKGAVVTMEEEHIDEVEQDSVKACN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1660 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 13 673 IPR045134 -
Lal18g1660 706 SMART ring_2 526 583 IPR001841 -
Lal18g1660 706 SMART ring_2 153 191 IPR001841 -
Lal18g1660 706 SMART PHD_3 22 72 IPR001965 -
Lal18g1660 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 638 IPR013083 -
Lal18g1660 706 ProSitePatterns Zinc finger RING-type signature. 541 550 IPR017907 -
Lal18g1660 706 MobiDBLite consensus disorder prediction 612 679 - -
Lal18g1660 706 SUPERFAMILY RING/U-box 508 597 - -
Lal18g1660 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Lal18g1660 706 Pfam Zinc finger, C3HC4 type (RING finger) 151 195 - -
Lal18g1660 706 Pfam SAD/SRA domain 286 434 IPR003105 -
Lal18g1660 706 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 13 673 - -
Lal18g1660 706 ProSitePatterns Zinc finger PHD-type signature. 23 71 IPR019786 -
Lal18g1660 706 ProSiteProfiles YDG domain profile. 283 431 IPR003105 -
Lal18g1660 706 Pfam RING-type zinc-finger 526 567 IPR027370 -
Lal18g1660 706 SMART G9a_1 278 435 IPR003105 -
Lal18g1660 706 MobiDBLite consensus disorder prediction 638 660 - -
Lal18g1660 706 SUPERFAMILY RING/U-box 145 201 - -
Lal18g1660 706 Gene3D - 254 452 IPR036987 -
Lal18g1660 706 Coils Coil 597 624 - -
Lal18g1660 706 ProSiteProfiles Zinc finger RING-type profile. 153 192 IPR001841 -
Lal18g1660 706 MobiDBLite consensus disorder prediction 617 637 - -
Lal18g1660 706 SUPERFAMILY PUA domain-like 256 450 IPR015947 -
Lal18g1660 706 MobiDBLite consensus disorder prediction 661 679 - -
Lal18g1660 706 SUPERFAMILY FYVE/PHD zinc finger 15 75 IPR011011 -
Lal18g1660 706 ProSiteProfiles Zinc finger PHD-type profile. 20 74 IPR019787 -
Lal18g1660 706 ProSiteProfiles Zinc finger RING-type profile. 526 584 IPR001841 -
Lal18g1660 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 218 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1660 Lal-Chr18 17872408 17876507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1660 10 613 C2H2 Transcription Factor Family AT5G39550 59.314 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1660 K10638 - gmx:100781044 935.25