Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1647 ATGCAATCAGATAGTGGAAAGTTATTCATTGGTGGGATATCATGGGACACAAATGAAGAGCGACTCCGAGAGTATTTCAGTAATTATGGCGAGGTTGTGCAATCAGTGATCATGAAAGACCGGACAACAGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTTTCCGACCCAGCTGTTGCAGATATAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGACCAGAACTTAGTGAGTAGGAACAGTGGCAGCAGCGTCCATGGTTCTCCTGGTCCAGGCCGAACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACTGTGACAGAGAGTGATTTCAAGAAGTACTTCGATCAGTTTGGAACTATAACAGATGTTGTGGTGATGTATGATCACAACACTCAAAGGCCAAGAGGCTTTGGATTTATCACTTATGACTCTGAGGAGGCTGTTGAAAAGGTCTTACTTAAGACATTCCATGAACTGAATGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCGGGGCCAAGCCGCAGCCCGATTGGTGGATATAACTATGGTCTGAGCAGGGTCAATAGTTTCTTAAATGGATTCCCTCAAGGGTATACTCCAAGTACTGTGGGAGGTTATGGGCTTCGGGTGGATGGCAGATTCAGTCCTGTTGCTAGTGGTCGAAGTGGATTTGGTGCTCCATTTGGATCTGCTTATGGAATGAGTATGAATTTTGAGCCTGGCTTGAGTGCTTCTGGATTTGGAGGAAATGCAAATTTCAGTAGTAACCTTAGCTATGGTCAGGGATTAAATCCTTATTATATTGGCAGCTCCAATAGGTTTGCGAGTCCTGTTGGATATGACAGTGGTAGTGGCGGAAACAATTCTTTCTTCAGCTCAGTGACTCGAAATTTGTGGGGGAACGGTGGCCTTAGTTACGGAACAACTTCTGCAAATTCCAATGCATACATTGGATCAGGTAGTGGGAGTGTTATTGGAGGAAACACATTTGACAATACTGGAGTCAACTGGGGGGGAAACACTGTGTCGTCACAAAGTACTGGCGTCAACCTTGGATATGGAGGCGGCAACAACAGCTATGGTTTGGGTACTGGAGGGTATGGAAGAAGCATTGCTACCACTATTGCCCCAACATCTTCTTACTCTCCATCAAATGGTGGTGTCGATGAGGCTTTTGCTGATTTTTACAATAATAGTTCTGTTTATGGCAACCCTACTTGGCGATCTTCAAATTCTGAGCAAGAAGGATCTGGTCCCTTCGGTTATGGACTTGGCGGTGCAGCTTCAGATGTTTCTGCCAAAAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGAAAACCACCCAAGAATTGACTTCCAAAGCTATACAAACACCAACCAAAGTAGAAAGTGCCAAGCAATAACTCAACTTAACATAAGACCTACTTGCCCCCATAACTTCAAACCCCTGAAACACATTCACAAGCCCAAGCACCACGCAGGAGTACCCTACAAAGTGGTGGTATGA 1587 0.4468 MQSDSGKLFIGGISWDTNEERLREYFSNYGEVVQSVIMKDRTTGRARGFGFVVFSDPAVADIVIKEKHNIDGRMVEAKKAVPRDDQNLVSRNSGSSVHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPIGGYNYGLSRVNSFLNGFPQGYTPSTVGGYGLRVDGRFSPVASGRSGFGAPFGSAYGMSMNFEPGLSASGFGGNANFSSNLSYGQGLNPYYIGSSNRFASPVGYDSGSGGNNSFFSSVTRNLWGNGGLSYGTTSANSNAYIGSGSGSVIGGNTFDNTGVNWGGNTVSSQSTGVNLGYGGGNNSYGLGTGGYGRSIATTIAPTSSYSPSNGGVDEAFADFYNNSSVYGNPTWRSSNSEQEGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRENHPRIDFQSYTNTNQSRKCQAITQLNIRPTCPHNFKPLKHIHKPKHHAGVPYKVVV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1647 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Lal18g1647 528 CDD RRM2_DAZAP1 105 184 IPR034131 GO:0003723
Lal18g1647 528 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Lal18g1647 528 SMART rrm1_1 108 180 IPR000504 GO:0003723
Lal18g1647 528 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal18g1647 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 166 IPR000504 GO:0003723
Lal18g1647 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Lal18g1647 528 SUPERFAMILY RNA-binding domain, RBD 105 203 IPR035979 GO:0003676
Lal18g1647 528 MobiDBLite consensus disorder prediction 81 104 - -
Lal18g1647 528 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 471 - -
Lal18g1647 528 Gene3D - 104 190 IPR012677 -
Lal18g1647 528 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 471 - -
Lal18g1647 528 Gene3D - 4 88 IPR012677 -
Lal18g1647 528 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal18g1647 528 MobiDBLite consensus disorder prediction 86 100 - -
Lal18g1647 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1647 Lal-Chr18 17807028 17813774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1647 8 186 Eukaryotic Initiation Factors Gene Family AT2G36660 29.255 2.03e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1647 K14411 - gmx:100795907 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1647 18 17807028 17813774 Lal22g0029 22 215960 219444 LSH