Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1645 ATGTCACTGAATCGAAGGTTTTATGCTTCAAATGGAAGATTGCAACAACAAAGTATGAAGTCTTTGAAGGCAAATGAGCCTTTGCGTGGGTCAAATTCTGCTAGGACATGTAGAAGGAAGCCCTTGCTTCTTTTGATGTTTGGTCTTGCGGCTATAGGAGGTGTTTTGTTGAGTTTCAATAGTAAGTGTTTGATGGGCAAGGAAAATGAAGCAGGTTGTGAAGAGAGAGCAAGAATCTTGCTAGATCATTATAATGTCAGCAAGAAGCAGCTTCATGTTTTGGCTTCTTTATTCTCTGGATCTGATCAGGTGCCTAAAATGCAGATTTCATCCTACTGTATTGATGAAAGAAGACTACAAATGCTGTTAAGCAGTGGCATAGTCAACACTTCATCACAGTTAATTTGTCCAGAGAATCAGGAGTTACAAAAGGAGCATAAATGTGTTGCAGACACTGTAGAACCCATAGAACAATGCCCACTTCCTGATGATTATGCCCCGACGAGGCTTGAATTATCATTCCTATTGAAAAAACATGTAGCGTTGGCCTCAAACTCTGCACCTTCATCCAATTTGGTTAATTATTTGCTTTGTGGAATGAAGATTTTGAAATTTGGGATTATTTTGACTTCGCAGAACATTTTGCAGTCATATAAACTGCGAGTATGTGAAATTAAGGATCTTATGACCTCATCAAAGTTGGTTAAAGGATGCTGGTGGGTTCTCATAGGAATTATAATGTGCTGCAAGTTGTCTGGCTTCTGTTTATTATGGAGGAGCCAAAAGCAGAAGCTAGTGAAGGGACAATCAGTTGTTCAGAAAAAGAAGCTGCAACTTTTTTCTCGAGTTCCTTCAAATAGTGCTGGGAGGTGGAGGAAAAAGTTTTTAGTTATATTTGTATCACTTGGAATAGTTGGGTCCATTTGGTTATTCTGGCACTTAAATATGAACATTATGCAGAGAAGAGAAAAATTGCTTGCTAACATGTGTGATGAGCGAGCTCATATGCTGCAAGATCAGTTCAATGTAAGCATGAACCACGTTCATGCCCTGGCTATTCTTGTATCTACCTTTCACCATGATAAACATCCTTCTGAAATCAACCAGAAAATATTTGGAGAATATACAGAAAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTATGAAAGTTCTCCACTCTGATAGAATGCATTTTGAGAATCAGCACGGGTGGACAATTAAAAATATGGAAACTGAGAATGAAGCTCTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCGGCACCCATGCAAGATGAATATGCACCAGTCATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGGGATAATATTTTGCGGGCAAGAGCATCAGGAAAGGGGGTTCTGACATCTCCATTTAAACTACTAAAATCCAATCACCTAGGTGTCGTACTTACATTTGCTGTCTATAACACAAACCTTCCTCTATATGCTACAGTGGAGCAGCGTATTGAAGCTACTGTGGGGTATCTTGGTGCATCTTATGATGTTCCATCACTAGTGGAGAAGCTTCTGCATCAACTTGCCAGCAAGCAAACCATTGTTGTCAATGTTTATGATACAACTAATGCATCTATACCCATCACAATGTATGGTACTGATGTTGTTGATACTGGTCTACTGCATATAAGCAGTCTAGATTTTGGGGATCCTCTACGGAAACATGAGATGCACTGCAGGTTCGAGCAGAGGCCTCCATTACCTTGGACAGCAATAAGTTCATCTGTGGGGGTGCTTGTTATTACTTTTCTTCTCGGTCATATTTTTTATGCAGCAATAAATCGAATAGCAAAAGTGGAGGATGACTATCGTGAAATGAGGGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACCGTTTCACATGAGATCAGGACTCCGATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGACCTCGATGAAACCCAGATGGACTACGCCCAAACTGCCCATAGGAGTGGTAACGATCTTATATCAGTGATAAATGAGGTTCTTGATCAGGCGAAGATTGAGGCAAGAAAGCTTCAACTTCAAGCTGCAGCTTTCAAACCACATGCTATTCTAGACGAAGTTCTATCACATTTCTTAGGCAAATCTAATGAGAAAGGAATTGAGTTGGCTGTTTATGCATCCAATCAAGTACCTGAAGTTGTCATTGGTGATCCTAAACGGTTCCAGCAAATAATTACAAATCTTGTTGGCAATTCACTCAAGTTCACTAATGATAAAGGACATGTATTAGTATCGGTTCATCTGGTGAGTGAAGTGAAGAACCCTCTTGATATTATGGATGAAGTGTTGAGAGAAAGCTTAAACTTGGATCAAGACATCTCAAACAGAACATATAATACATTAAGTGGGTTTCCCGTAAGCAAGAGGTGGCAAAGCTGGGAAAATTTTAAACAGTTAGGTAGCTTAAATATGGATGACCCTGAAATGGTTCAACTGCTAGTAACAGTTGAGGATACAGGTATAGGAATTCCTATGGATGCACAAAGACGCATATTCACACCTTTTATGCAGGCTGATAGTTCAACCTCCCGGACATATGGTGGAACTGGAATAGGACTAAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAGTGGGCAGTACTTTTTCATTTACCGGAACTTTCAGAAAAGGAGATACCACATCTATTGATGCAGAGTGGCAGAAGTGCAATCTTTTTGCTTCACAGTGCCAAGGTTTGAGAGTGTTGTTGGTAGATAGAAGAAAAGTAAGAGCACAGGTTACTAGATATTATCTGCAGAGATTGGGGATGTCTGTGGATGTAACTTCCAGTCTCAAATCCGAATGCTCTTGTGTGTCTAGTACATGCAACATAAGTATGTTGACACAGTTGGCCTTGATTTTAATAGACAAGGATGTTTGGGATAAGGAAAATAGTATCTTATTCACCATCAAGAAACACGCACAAAATGGCATCAACATGGACCCAATAAAGTTTCCTAAGATTTTTCTCCTGGCCGCCCACCTTAGCACCAATGAACGTGATGAGCTCAAGTCAATTGGTGTTGTAGATGACGTGCTAGTAAAACCTCTTTGGTTCAGAGATTTGGGTCACTACTTCAGAGAGTCCCTTGGAACTGAAAAAAGGCAAACACATGGAAAGAAAGCATCAAAACTTGGGAATTTATTAATGCACAAAAGAATTTTGGTGGTTGATGATAATTCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCAAAGATATGGAGCAATAGTTACTTGTGTGGAGAGTGGCAGGGCTGCTCTACAGATGCTTAAGCTACCACATCATTTCGATGTGTGTTTCATGGATCTCCAGATGCCAGAAATGGACGGTTTTGAAGTGACGAGGCAAATCCGCAGTCTAGAGAATGAGGTAAATGAGAAAATTGCAGGTGGGAAAGCATCAGTGGAGATGTATGGTAATATGGCTTATTGGCACACTCCAATACTAGCAATGACAGCTGATGTAACGCGGGATTCAAATGAAGAGTGCAGAAAGTGTGGGATGGATGACTATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTGTATGGCAATGGCACGTTTCTTTAAGCCTGGTTCATAG 3750 0.404 MSLNRRFYASNGRLQQQSMKSLKANEPLRGSNSARTCRRKPLLLLMFGLAAIGGVLLSFNSKCLMGKENEAGCEERARILLDHYNVSKKQLHVLASLFSGSDQVPKMQISSYCIDERRLQMLLSSGIVNTSSQLICPENQELQKEHKCVADTVEPIEQCPLPDDYAPTRLELSFLLKKHVALASNSAPSSNLVNYLLCGMKILKFGIILTSQNILQSYKLRVCEIKDLMTSSKLVKGCWWVLIGIIMCCKLSGFCLLWRSQKQKLVKGQSVVQKKKLQLFSRVPSNSAGRWRKKFLVIFVSLGIVGSIWLFWHLNMNIMQRREKLLANMCDERAHMLQDQFNVSMNHVHALAILVSTFHHDKHPSEINQKIFGEYTESTAFERPLTSGVAYAMKVLHSDRMHFENQHGWTIKNMETENEALVQDCIPENLDPAPMQDEYAPVIFAQETVSHIVSIDMMSGKEDRDNILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLYATVEQRIEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASIPITMYGTDVVDTGLLHISSLDFGDPLRKHEMHCRFEQRPPLPWTAISSSVGVLVITFLLGHIFYAAINRIAKVEDDYREMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDETQMDYAQTAHRSGNDLISVINEVLDQAKIEARKLQLQAAAFKPHAILDEVLSHFLGKSNEKGIELAVYASNQVPEVVIGDPKRFQQIITNLVGNSLKFTNDKGHVLVSVHLVSEVKNPLDIMDEVLRESLNLDQDISNRTYNTLSGFPVSKRWQSWENFKQLGSLNMDDPEMVQLLVTVEDTGIGIPMDAQRRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGVGSTFSFTGTFRKGDTTSIDAEWQKCNLFASQCQGLRVLLVDRRKVRAQVTRYYLQRLGMSVDVTSSLKSECSCVSSTCNISMLTQLALILIDKDVWDKENSILFTIKKHAQNGINMDPIKFPKIFLLAAHLSTNERDELKSIGVVDDVLVKPLWFRDLGHYFRESLGTEKRQTHGKKASKLGNLLMHKRILVVDDNSVNRKVAEGVLQRYGAIVTCVESGRAALQMLKLPHHFDVCFMDLQMPEMDGFEVTRQIRSLENEVNEKIAGGKASVEMYGNMAYWHTPILAMTADVTRDSNEECRKCGMDDYVSKPFEEEQLCMAMARFFKPGS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1645 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 760 926 IPR003594 -
Lal18g1645 1249 PANTHER TWO-COMPONENT HISTIDINE KINASE 282 1246 - -
Lal18g1645 1249 PRINTS Bacterial sensor protein C-terminal signature 856 870 IPR004358 GO:0016310|GO:0016772
Lal18g1645 1249 PRINTS Bacterial sensor protein C-terminal signature 874 884 IPR004358 GO:0016310|GO:0016772
Lal18g1645 1249 PRINTS Bacterial sensor protein C-terminal signature 891 909 IPR004358 GO:0016310|GO:0016772
Lal18g1645 1249 PRINTS Bacterial sensor protein C-terminal signature 915 928 IPR004358 GO:0016310|GO:0016772
Lal18g1645 1249 Pfam Response regulator receiver domain 1109 1240 IPR001789 GO:0000160
Lal18g1645 1249 Gene3D - 713 932 IPR036890 -
Lal18g1645 1249 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 633 714 IPR036097 GO:0000155|GO:0007165
Lal18g1645 1249 Coils Coil 625 645 - -
Lal18g1645 1249 ProSiteProfiles Response regulatory domain profile. 955 1085 IPR001789 GO:0000160
Lal18g1645 1249 Gene3D - 619 711 - -
Lal18g1645 1249 Gene3D CHASE domain 367 594 IPR042240 -
Lal18g1645 1249 SMART HKATPase_4 760 931 IPR003594 -
Lal18g1645 1249 ProSiteProfiles Response regulatory domain profile. 1108 1245 IPR001789 GO:0000160
Lal18g1645 1249 PANTHER HISTIDINE KINASE 2 282 1246 - -
Lal18g1645 1249 SMART REC_2 1107 1241 IPR001789 GO:0000160
Lal18g1645 1249 Coils Coil 698 718 - -
Lal18g1645 1249 CDD HisKA 648 709 IPR003661 GO:0000155|GO:0007165
Lal18g1645 1249 CDD REC_hyHK_CKI1_RcsC-like 1109 1237 - -
Lal18g1645 1249 ProSiteProfiles Histidine kinase domain profile. 655 931 IPR005467 -
Lal18g1645 1249 SMART HisKA_10 648 713 IPR003661 GO:0000155|GO:0007165
Lal18g1645 1249 Pfam His Kinase A (phospho-acceptor) domain 648 712 IPR003661 GO:0000155|GO:0007165
Lal18g1645 1249 Gene3D - 65 102 - -
Lal18g1645 1249 Gene3D - 314 366 - -
Lal18g1645 1249 Gene3D - 1105 1247 - -
Lal18g1645 1249 Gene3D - 948 1089 - -
Lal18g1645 1249 Pfam CHASE domain 366 560 IPR006189 -
Lal18g1645 1249 SUPERFAMILY CheY-like 1106 1245 IPR011006 -
Lal18g1645 1249 SMART CHASE_2 363 562 IPR006189 -
Lal18g1645 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 702 926 IPR036890 -
Lal18g1645 1249 ProSiteProfiles CHASE domain profile. 363 587 IPR006189 -
Lal18g1645 1249 SUPERFAMILY CheY-like 951 1085 IPR011006 -
Lal18g1645 1249 CDD HATPase_EvgS-ArcB-TorS-like 765 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1645 Lal-Chr18 17781813 17791244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1645 232 1247 Miscellaneous Gene Families AT5G35750 62.832 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal18g1645 CHASE 2.8e-32 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1645 K14489 - gmx:100805107 1878.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1645 18 17781813 17791244 Lal22g0031 22 225010 233501 LSH