Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1629 ATGGGTTCTAATTCAGCTGTAGATTTGATGGAGAGTTCATCTAAGGTTCATTATTCTGGACTTCACATGGATGGCTTAGAACAAAGAAGTACTGGTGAAGAACAATTAATAATGACTTCAGAAACTGGCATGCATAAACAACCTTTTATCATAGGAGTTGCTGGAGGTGCAGCATCAGGCAAGACTGCAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAAGGTTCTTTTTATCATAATTTGACCGAGGAGGAAGTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCAATTACTACGGGTCATGGATAAGTTGAAGCGTGGTCAGGCAGTAGAAATTCCGAAGTATGATTTCAAGGGTTACAAGAATGATGTGTTTCCAGCAAGAAGGGTAAACCCTGCAGATGTTATAATTTTGGAAGGCATTCTCGTCTTTCATGATCCACGTCTTCGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGACTAGCCAGAAGGATTAAGCGTGATACTTCTTTGAAGGCTTGGGATATTGGAGCAGTTCTTGATCAGTACTCAAAATTTGTGAAGCCCGCTTTTGATGACTTCATTCTTCCTACAAAGAAATATGCTGATATCATTATACCCCGTGGAGGAGATAATCACGTGGCTATTGATTTGATTGTACAGCATATCCACACAAAGCTCAGTCAGCATGATCTGTGTAAAATATATCCTAATTTATATGTCATTCACTCTACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATTCTCAGACAACGAAGCATGATTTTGTATTTTATTCTGACCGTTTGATTCGATTGGTTGTAGAACATGGCCTGGGGCATCTTCCATTTACAGAAAAGCAAGTAACCACACCTACTGGTTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCCATCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGGTGACAATGGTCAGCAGCTAATATATGAGAAGTTGCCTAATGATATCTCAGATAGGCATGTGTTACTGTTGGATCCTATCTTAGGCACAGGTAACTCAGCTGTTGAAGCTATTTCCTTACTTTTAAGAAAAGGTGTACCAGAGTCCAACATTATATTTCTCAATCTAATATCAGCACCTCAAGGTGTGCATATGGTCTGCAAAAGCTTTCCTAGAATCAAAATTGTGACATCTGAGATTGAGATTGGTTTGAATGAACATTTTCGTGTCATACCTGGCATGGGTGAGTTTGGAGATCGGTACTTCGGAACAGATGATGATGATGACCAGCAGGTGGTGATCCCTTCATAG 1443 0.3985 MGSNSAVDLMESSSKVHYSGLHMDGLEQRSTGEEQLIMTSETGMHKQPFIIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQGSFYHNLTEEEVTRVQDYNFDHPEAFDTEQLLRVMDKLKRGQAVEIPKYDFKGYKNDVFPARRVNPADVIILEGILVFHDPRLRALMNMKIFVDTDADVRLARRIKRDTSLKAWDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIHTKLSQHDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVEAISLLLRKGVPESNIIFLNLISAPQGVHMVCKSFPRIKIVTSEIEIGLNEHFRVIPGMGEFGDRYFGTDDDDDQQVVIPS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1629 480 Pfam Uracil phosphoribosyltransferase 266 468 - -
Lal18g1629 480 Gene3D - 252 468 IPR029057 -
Lal18g1629 480 SUPERFAMILY PRTase-like 250 469 IPR029057 -
Lal18g1629 480 Gene3D - 44 251 IPR027417 -
Lal18g1629 480 PANTHER URIDINE KINASE 15 471 - -
Lal18g1629 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 241 IPR027417 -
Lal18g1629 480 PANTHER URIDINE KINASE 15 471 - -
Lal18g1629 480 CDD UMPK 50 248 IPR000764 -
Lal18g1629 480 CDD PRTases_typeI 325 441 IPR000836 -
Lal18g1629 480 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524|GO:0016301
Lal18g1629 480 PRINTS Uridine kinase signature 48 65 - -
Lal18g1629 480 PRINTS Uridine kinase signature 78 89 - -
Lal18g1629 480 PRINTS Uridine kinase signature 123 138 - -
Lal18g1629 480 PRINTS Uridine kinase signature 180 190 - -
Lal18g1629 480 PRINTS Uridine kinase signature 194 205 - -
Lal18g1629 480 PRINTS Uridine kinase signature 216 229 - -
Lal18g1629 480 TIGRFAM udk: uridine kinase 47 249 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1629 Lal-Chr18 17684430 17691549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1629 1 471 PRT Gene Family AT4G26510 82.526 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1629 K00876 - gmx:100798205 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0757 3 6519851 6526868 Lal18g1629 18 17684430 17691549 LSH
Lal3g0757 3 6519851 6526868 Lal18g1629 18 17684430 17691549 PCT
Lal18g1629 18 17684430 17691549 Lal18g1629 18 17684430 17691549 PCT
Lal18g1629 18 17684430 17691549 Lal3g0757 3 6519851 6526868 PCT