Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1611 ATGATGACGAGGTTGTTGTCTTATAGAGTTGTACTAGTGTTGAGTGTATTGGTTTTCATGATGTTGGCTCAGGTGGATTTAGCAGAAGGTGATGCTAGGAACTATATTAGTTGGGAAGATTTGCAAGTTGATGAGCGAAGGTTGGAATTGAAGTCTCATGATGAGTTTAAAGTTATTGTGGTTGATCAGCATGGAAAGGGACATTCGAAAACTGTTCAAGGAGCAGTGGATATGGTTCCAAATCACAACACTCAAAGGGTGAAAATATATATTTATCCAGGAGTTTATAGAGAGAAGGTGCTTGTGCCAAACAACAAGCCTTATATTTCATTTATAGGTAGAAGAAATGAAACATCGGGTGCTGTTATTACTTGGAACAGTAAATCATCTGATAGAGGACCCAATGGCCAAACATTGGGCACATATGGTTCAGCAACTGTAGGAATAGAATCAGATTATTTCTGTGCAACTCAGATCACTTTTGAGGCAAGTACAACTTTTGCTACCCAAACACTTTAA 519 0.3834 MMTRLLSYRVVLVLSVLVFMMLAQVDLAEGDARNYISWEDLQVDERRLELKSHDEFKVIVVDQHGKGHSKTVQGAVDMVPNHNTQRVKIYIYPGVYREKVLVPNNKPYISFIGRRNETSGAVITWNSKSSDRGPNGQTLGTYGSATVGIESDYFCATQITFEASTTFATQTL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1611 172 Pfam Pectinesterase 59 164 IPR000070 GO:0030599|GO:0042545
Lal18g1611 172 Gene3D - 20 171 IPR012334 -
Lal18g1611 172 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 165 - -
Lal18g1611 172 SUPERFAMILY Pectin lyase-like 58 165 IPR011050 -
Lal18g1611 172 PANTHER PECTINESTERASE QRT1 15 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1611 Lal-Chr18 17566167 17568695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1611 5 162 Carbohydrate Esterase AT5G55590 47.753 1.68e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1611 K01051 - gmx:100813382 220.32