Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1607 ATGGCTGTTACTACTACTATCTTTTCTCTATATCCTCTTTTGAATTGTGAAGTAAGAAGAAGAAGACATAAGAATGTGGTTGTTGTTGTTGCTGCATCACATTCCAATCCCAGGATTCTCAAAACCAACAGAAAGTCTAAGTATGGCGATTTCCTCTCTCCCTACGACGATGATGATGATGATGATGATGATTTCTCTGATGACGAATTTGTTGAGCCTGCTCGATTTGATGTCAATGACAATAGATCCAAGTTACATGCAATTAAAGGAAAAGATAGAGAACAAAAGAAAGAGTGGGGTGTAAAATCTTTTCATAATGGACAAAGCACAAAAATGCCCAGAAGTGAGAGAGTGGCTTCCTTACAAGCAAATAACAGCGGAAAGTTTGTTGGAAATTTGAAGGATAAAAAATATCCACGGTTGTCAGAAGAGATTATTTTGGATGTGAGATGGTTACCACTTCTCGATTATTTAAGCACCTTTGGAATTAAGGAATCACACTTTCTCCAAATGTATGAGAGGCACATGTCATCATTTCAAATGACTGTATGTGTTGCACAGGAAAGATTAGAGTACTTAATGAGTGTTGGTGTCAAACATAGAGATATAAGAAAAATCCTTCTGAGACAGCCACAAATTCTGGAGTATACGTTGGAAAACAATTTGAAGTCCCACGTTGCTTTCTTGATGGGCTTGGGTATACCTAATTCCAGAATAGGGCAAATCATTGCTGCTGTGCCGTCCTTATTTTCGTACAGTGTTGAAAATTCGTTAAAACCAACAGTAAGATATTTAGTTGAGGAAGTTGGCATCAATGAAAAAGAATTGGGAAAAGTCATCCAGCTGAGCCCTCAAATTCTTGTCCAGCGTATCGACATTTCATGGAATACTCGATACATGTTTCTTTCCAAAGAGTTGGGAGCTCCTAAAGATAGCGTAGTAAAAATGGTGAAAAAACATCCTCAACTTCTCCATTACAGCATAGATGATGGATTATTGCCAAGGATAAATTTTTTAAGGAGCATAGGAATGAAAAATGCAGACATTTTGAAAGTCTTGACTAGCCTTACACAGGTGCTATCTTTGTCCCTGGAGGAGAATCTAAAGCCCAAGTATTTGTACTTGGTAAATGAACTACACAATGAGGTGCATTCATTGACCAAATACCCAACTTACCTTAGCTTGTCTTTGGATCAGAGAATTCGCCCTCGTCATAGGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCCCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAGAATTGGGCTAAAACCAGTTTGGATACATATTTGGCATTTCGTCAGAGATTATTGCTTAAAAAGTTTGCTGAGAAATATGAAAGAAAAATGTGA 1392 0.3779 MAVTTTIFSLYPLLNCEVRRRRHKNVVVVVAASHSNPRILKTNRKSKYGDFLSPYDDDDDDDDDFSDDEFVEPARFDVNDNRSKLHAIKGKDREQKKEWGVKSFHNGQSTKMPRSERVASLQANNSGKFVGNLKDKKYPRLSEEIILDVRWLPLLDYLSTFGIKESHFLQMYERHMSSFQMTVCVAQERLEYLMSVGVKHRDIRKILLRQPQILEYTLENNLKSHVAFLMGLGIPNSRIGQIIAAVPSLFSYSVENSLKPTVRYLVEEVGINEKELGKVIQLSPQILVQRIDISWNTRYMFLSKELGAPKDSVVKMVKKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKVLTSLTQVLSLSLEENLKPKYLYLVNELHNEVHSLTKYPTYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDESFCQNWAKTSLDTYLAFRQRLLLKKFAEKYERKM 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1607 463 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 SMART mt_12 350 382 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 SMART mt_12 383 414 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 SMART mt_12 277 309 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 SMART mt_12 240 272 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 Pfam mTERF 156 230 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 Pfam mTERF 219 411 IPR003690 GO:0003690|GO:0006355
Lal18g1607 463 Gene3D Transcription termination factor 3, mitochondrial 213 450 IPR038538 -
Lal18g1607 463 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 21 455 - -
Lal18g1607 463 PANTHER CGI-12 PROTEIN-RELATED 21 455 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal18g1607 mTERF 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1607 K15032 - gmx:100809638 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1607 18 17538513 17541265 Lal18g1607 18 17538513 17541265 ECH