Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1606 ATGTCTCATAAACATAAAACGTCCTATAGCTCCAGCGGCTTCTGCATTGAGCCTGTACAAAATCACGAGTCATATTGCTTCCTACCAAATGAGACCCTAGAAAACTACTCTTCCTCTTATAATAGCAGCCAAGTTACCTATCCTTCAGTTCACTCTATAAAACAATATTGCCCCCTTGAATCTTCTACAAACAATAGTTTGCTTTGCCAAAACTCTCCATCTACTGGCAGTTTCTCAACTGACAATAGCCCAGTGTCAAAACCATATGTGTTAATGCCACAACATTATCTTGAAATCATTAATAATTCGCTAGAGAATGAATCTTGCTTGACACATGAAAACAATGATGAGCTGACGCTAAAGATAAGAGAACTTGAAAGTGCTATGCTGGGAGCTGATGCAGATATTCTAGACATATATATGATTCCACAAGAGTCAGATCCTTTTTTATTAGAGGCCGAGAAGTGGAAGAAAATGATGGAGATTGTATATAGAGGGGATTTGAAAGAGATGCTTTGTGCTTGTGCAAAAGCAGTAGAAGGGAACGAGAAGGAGACTACTGAATTGTTAATGTCAGAGTTGCGTAAAATGGTGTCCATCTCAGGCAACCCGATCCAACGATTGGGAGCTTACATGTTGGAGTCTCTAGTTGCAAGGCTAGCCTCTTCAGGAAGCACAATCTATAAATCCTTGAAATGTAAAGAGCCTACAAGCAATGAACTCCTTTCATACATGCATGCACTTTATGAAATCTGTCCATACCTCAAGTTCGGTTATATGTCAGCAAATGGAGCAATTGCTGAAGCCATGAAGGATGAAACTGAAGTCCACATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGGGAAGTCTAATCCGAGCTCTTTCTCGCAGACCTGGAGGACCTCCCAAGATTAGAATAACGGGTCTTGATGACTCTACTTCAGCTTATGCAAGAGGAGGGGGACTTGATATTATTGGAGAAAGGTTATCAGGACTTGCCTTGTCATATGGGGTACCTTTTGAGTTTCATGCAATAGATGCTTCTCCTTCTGAGATTCAACTTGAAGACCTTCAACTTCGATCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGTTGCACCATGTGCCAGATGGAAGTGTGGACGGTCAGGATTACCGTGACTGGTTGTTGAGATTGGCAAAGTGCTTGTCTCCTAAGGTAGTGACTCTAGTTGAGCAAGAATCAAATACCAACAATGTCCCATTCTTCCCTCGGTTTGTTGAGACATTGAACTACTACTTGGCTATTTTTGAATCAATCGACGTTGCTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAACAACATTGTTTGGCTCGAGAAATTGTCAACTTAATAGCGTGTGAAGGTGCAGAAAGAGTAGAACGTCACGAGCTTATGAACAAGTGGAGATTGCGTTTCAAAATGGCTGGATTCACACCATATCCATTGAGCTCCTATATTAATTCCTCAATCAAGAATCTTCAGGAAAGATATGGCAGACACTACACTGTAGAAGAGAGAGATGGTGCTTTATATCTTGGTTGGATGAATCAAGTTATTGTTGCCTCTTGTGCTTGGAGGTGA 1617 0.41 MSHKHKTSYSSSGFCIEPVQNHESYCFLPNETLENYSSSYNSSQVTYPSVHSIKQYCPLESSTNNSLLCQNSPSTGSFSTDNSPVSKPYVLMPQHYLEIINNSLENESCLTHENNDELTLKIRELESAMLGADADILDIYMIPQESDPFLLEAEKWKKMMEIVYRGDLKEMLCACAKAVEGNEKETTELLMSELRKMVSISGNPIQRLGAYMLESLVARLASSGSTIYKSLKCKEPTSNELLSYMHALYEICPYLKFGYMSANGAIAEAMKDETEVHIIDFQINQGIQWGSLIRALSRRPGGPPKIRITGLDDSTSAYARGGGLDIIGERLSGLALSYGVPFEFHAIDASPSEIQLEDLQLRSGEAIAVNFAMMLHHVPDGSVDGQDYRDWLLRLAKCLSPKVVTLVEQESNTNNVPFFPRFVETLNYYLAIFESIDVALPREHKERINVEQHCLAREIVNLIACEGAERVERHELMNKWRLRFKMAGFTPYPLSSYINSSIKNLQERYGRHYTVEERDGALYLGWMNQVIVASCAWR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1606 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 537 IPR005202 -
Lal18g1606 538 Pfam GRAS domain family 169 538 IPR005202 -
Lal18g1606 538 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 16 537 - -
Lal18g1606 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1606 Lal-Chr18 17525834 17527450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1606 49 538 GRAS Transcription Factor Family AT1G50600 57.916 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lal18g1606 GRAS 2.9e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1606 - - gmx:100817120 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1606 18 17525834 17527450 Lal18g1606 18 17525834 17527450 ECH
Lal11g0695 11 6575077 6581541 Lal18g1606 18 17525834 17527450 PCT
Lal18g1606 18 17525834 17527450 Lal11g0695 11 6575077 6581541 PCT