Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1604 ATGGACGCTTCTACCACCAACGAAAGCAACTCAGTTTCGGACCCAAACGACCCGATTCAAAAAATCGGGTCGGGTCAGAACAATTCAGCTAGGTATAAGCTTATGTCGCCGGCGAAGCTTCCGATCTCAAGGTCGCCTTGCATCACCATACCTCCGGGGCTTAGTCCCACGTCATTTTTGGAATCCCCTGTTCTTCTTTCCAACATGAAGGTGGAGCCTTCACCTACTACAGGGTCCTTTTCTAAGCTTCATCAAACAGTACATAGTTATACGTCTTCTGCTGCGGCTACTACATTTCCTGTAACCAGTGCATGCCTCAATTCCAATACTGTTGAGGAAAGAAAACCAAACATCTTTGAGTTTAAACCAAACATGCTTAGAACTTATCCAATGCTATATTTTAAGGTTCCTGTGGACTTCAACAACCATGTAAGTGAACAATCTACTCAAGCAAAAGGTCCAGGAAAAGCTCAATCATTTGCCTCATCGCCATTAGTTGAAGGTGACGTAGCTGTTCCTTCTAGTGAATTAAGCCTTTCATCACCTGTTCAAATGGTTAGTTCTGGGGCTAGTACTCCTGTTGAAGTCGACTCAGAGGAATTGAACCACAAAGCCAACACAGCAACTGCGCTTCAAGCATCACAAGTTGAGGAGGTTAAAGGCAGTGGACTTTCAGTTGCACCTGAAAGAGCATCTGATGATGGATACAACTGGCGAAAATATGGGCAGAAACTTGTTAAAGGAAGTGAGTTTCCGCGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATTGTTTACAAAGGAACACATGATCATCCAAAACCTCAACCCAGCCGACGATACTCTGCTAGCACTATTGTGTCTATGCAAGAAGAGAGATCTGGTAAGGCTTCTTTTGCTGGCCGAGATGACAAAGCATCCAATATGTATGGTTTGGTGTCTTTTGCAGCTGATCCCAACAGCACTCCAGATCTATCGGCTGTGGCAACAAATGATTGTCAAGAGGGTGCTGCGCTTGTGTCAAACAGGACTAATGAGGAAATTGATGATGATGATCCCTTCTCGAAGCGTAGAAAAATGGAACTTGGAATTGCTGACGTAACTCCTGTAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACCCTGAGTGAGGTTGATATATTGGACGATGGGTATCGCTGGCGCAAGTATGGGCAAAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACAAATGCTGGTTGCCCGGTTAGAAAACATGTGGAGAGAGCATCTCATGACCCGAAAGCAGTGATAACGACATATGAGGGTAAACACAATCACGATGTACCAGCTGCAAGGAGTAGTAGCCATGACATGGCAGGACCAGCACCAGCAGGAACAAGAATAAAGTTAGAAGAAAGTGATACTATCAGCCTTGACCTTGGGATGGGAATAAGCTCAGCTGCTGAAAGTAGATCAAATGGGCAAAGGAAAATGCTGCTTTCTGAATTTGGCCACAGCCAAACTCAACAAGCCAGCAATTCCAACTTCAAGTTTGTTCATACTAGTGCAGGTCCGGTATACTTCGGCGTTCTAGATAATGGGGCAAATCCGTATGGTTCTAGAGGAAATAGGAGTGATGATCCATCTTTAAACCATGCCTCATCATATCCTTGCCCACAGAACATTGGAAGAGTACTAACTGGTCCATGA 1761 0.4463 MDASTTNESNSVSDPNDPIQKIGSGQNNSARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSFSKLHQTVHSYTSSAAATTFPVTSACLNSNTVEERKPNIFEFKPNMLRTYPMLYFKVPVDFNNHVSEQSTQAKGPGKAQSFASSPLVEGDVAVPSSELSLSSPVQMVSSGASTPVEVDSEELNHKANTATALQASQVEEVKGSGLSVAPERASDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSASTIVSMQEERSGKASFAGRDDKASNMYGLVSFAADPNSTPDLSAVATNDCQEGAALVSNRTNEEIDDDDPFSKRRKMELGIADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGPAPAGTRIKLEESDTISLDLGMGISSAAESRSNGQRKMLLSEFGHSQTQQASNSNFKFVHTSAGPVYFGVLDNGANPYGSRGNRSDDPSLNHASSYPCPQNIGRVLTGP 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1604 586 MobiDBLite consensus disorder prediction 555 586 - -
Lal18g1604 586 Gene3D WRKY domain 225 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 Gene3D WRKY domain 391 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 24 565 - -
Lal18g1604 586 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 565 IPR044810 GO:0003700
Lal18g1604 586 MobiDBLite consensus disorder prediction 555 578 - -
Lal18g1604 586 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 SUPERFAMILY WRKY DNA-binding domain 230 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 MobiDBLite consensus disorder prediction 1 28 - -
Lal18g1604 586 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 SMART WRKY_cls 406 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1604 586 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1604 Lal-Chr18 17518395 17523174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1604 35 586 WRKY Transcription Factor Family AT4G26640 52.941 1.23e-177 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal18g1604 WRKY 1.5e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1604 18 17518395 17523174 Lal18g1604 18 17518395 17523174 ECH
Lal3g0816 3 7424891 7432952 Lal18g1604 18 17518395 17523174 LSH
Lal18g1604 18 17518395 17523174 Lal6g0048 6 300965 306779 LSH
Lal3g0816 3 7424891 7432952 Lal18g1604 18 17518395 17523174 PCT
Lal18g1604 18 17518395 17523174 Lal18g1604 18 17518395 17523174 PCT
Lal18g1604 18 17518395 17523174 Lal6g0048 6 300965 306779 PCT
Lal18g1604 18 17518395 17523174 Lal3g0816 3 7424891 7432952 PCT
Lal6g0048 6 300965 306779 Lal18g1604 18 17518395 17523174 PCT