Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1601 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGGATTTCATGGGATACCGATGATGAAAGTCTCAGAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGTGCAACAGGTCGCACTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCTGCGGTTGCAGAAAGAGTCCTTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAGGCTGTTCCTAGGGATGACCAGCATGCTATAAATAGACAGCCTGGTGGTGTTCTAGGATCTCCTGGTCCCGGGCGCACGAAAAAGATTTTTGTGGGAGGTTTACCATCAACAATCACAGAAAGTGACTTTAAGCAGTATTTCGATCAGTTTGGTACAATTACCGATGTTGTGGTAATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTAGATAAAGTTCTATATAAAAAATTTCATGAACTGAATGGAAAGATGGTCGAGGTCAAGCGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCGAGCCGAAACCCATTGATAGGATATGACTTCGGTTTGAATAGGGCAAGCAGCTACCTAAATAGTTATGCTCAAGGTTTAAATCTAAATCCACTAGGAGGCTATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTTCTAGTAGTAGGAGTGGTTTTAACCAATTTGGTTCCGGTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAATGTATGGAGGGATATCCAACTATGGGAGCGGTTTAGGATATGGTAGGATGTTCAGTCCTTTCTACAATGGCAACAACTCGAGCCGATACACCACTCCTATTGGCTATAGTGGTAGCAACGCGAGAAGCGATTCTCTCGTGAACTCAACTTCTCGCAATGTATGGGGAAATGGAAGCCTGAATAACACTACCAATAGCCAAGTCAACCCCGGTGCTTACTTGGGATCTGGAAGTGGGACTTTTGGTATTTCCATTGGAAATAATGGCACATACTGGAGTCCGTCAGTTCCAACCCAAGGTGGAGGCGGTGCTACTGCTTCGGGCTTTACTAATTGGAGTAATGTTTATGAAGGTGGAGGAGATAGTAACATAGGATTAGGAGGGGGAGTGTATGGAAGGAACAGAAACACAAATGTGACTCAATCCACTTCCTTTGCTGCACCAGCTGGTGGTTATGAAGGATCCTATGGGAACTTGTACCACAATGGTTCGGTTTACAGTGACTCGACTTGGCGATCTGCTGCTTCTGAGGTAGATGGTTCTAGCTCGTTTGGATATGGACTTGGTGGTATAGCTTCAGAGGATCCAGTAAAGACTTCTGAGGGTTTTATTGCCAACTACAATGTAACAAGTAGACAACCTAATAGAGATTGGAGATATACTCAGGAAGATATAATGCCTCCCCATAGAGGTGCACCATCATTAGAGCTAAAAGTACTCCTAGTCTTTGATAAGATGGTGGGAAAGCTTGCCCCTAAATGGCTAAATTGA 1557 0.4419 MESDLGKLFIGGISWDTDDESLREYFGKYGEVIEAVIMRDRATGRTRGFGFVVFADPAVAERVLMDKHIIDGRTVEAKKAVPRDDQHAINRQPGGVLGSPGPGRTKKIFVGGLPSTITESDFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKKFHELNGKMVEVKRAVPKELSPGPSRNPLIGYDFGLNRASSYLNSYAQGLNLNPLGGYGVRMDGRFSPLSSSRSGFNQFGSGGYGMGVNLDSGLSPMYGGISNYGSGLGYGRMFSPFYNGNNSSRYTTPIGYSGSNARSDSLVNSTSRNVWGNGSLNNTTNSQVNPGAYLGSGSGTFGISIGNNGTYWSPSVPTQGGGGATASGFTNWSNVYEGGGDSNIGLGGGVYGRNRNTNVTQSTSFAAPAGGYEGSYGNLYHNGSVYSDSTWRSAASEVDGSSSFGYGLGGIASEDPVKTSEGFIANYNVTSRQPNRDWRYTQEDIMPPHRGAPSLELKVLLVFDKMVGKLAPKWLN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1601 518 Gene3D - 103 189 IPR012677 -
Lal18g1601 518 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 479 - -
Lal18g1601 518 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Lal18g1601 518 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lal18g1601 518 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal18g1601 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lal18g1601 518 MobiDBLite consensus disorder prediction 81 103 - -
Lal18g1601 518 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lal18g1601 518 Gene3D - 6 88 IPR012677 -
Lal18g1601 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal18g1601 518 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Lal18g1601 518 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Lal18g1601 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal18g1601 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 167 IPR000504 GO:0003723
Lal18g1601 518 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1601 Lal-Chr18 17497829 17501717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1601 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 3.02e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1601 K14411 - gmx:100788515 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1601 18 17497829 17501717 Lal18g1601 18 17497829 17501717 ECH
Lal18g1601 18 17497829 17501717 Lal22g0060 22 366212 369838 LSH
Lal18g1601 18 17497829 17501717 Lal6g0049 6 308575 311123 LSH
Lal11g0696 11 6615069 6622924 Lal18g1601 18 17497829 17501717 PCT
Lal18g1601 18 17497829 17501717 Lal11g0696 11 6615069 6622924 PCT