Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1595 ATGAAAAAGGGTATGGCGAATTCAGATGATGATGATGATGAACCTCAATCTTTGTGTTTAACAAATTATCACCTTGATGATGATAATGACATGCCTCTATCATTGATTATGCTTCCAATTAAGTGGAGTGAATCTGATGAAGATGACTCTATTGATGATTGTAAACAGAAGAAGGTGTTCATACATGGCTATCTTCACCCCAATAGGCTAAAGAAGATGTTTCCAGTTAAAGCTTGGAGCTTTAATCTTTCATCTTTGAAACCCATATTATCATTGCAAACAAAAGATGGAAACTGGATCAAACTTAAGAGCCCAAGGAAGAGCTTTGAGGCTACTATAAGGACCATTTTGATTACTATTCATTTCCTGCATTATGCTAAGAAATATCCTAAACTATCTTCTTCTAGATCTATTTGGGATAACTTGTCCAAAGTTAAGGAGTTGAGCTCTTATAAGTTAAAGCCTTCACTCAGTGATTTATCGAACCATATGCATTTGATTAGTGAAGCTGCCAAAAGAGACGATGTCTTAGCTAAGTCCAAGCTCTTGCTCACAATTTTAGAGGAGAATCCATCGAATCAGAAAATTTCTGATGAGAAAGTTCGTGATATGATGGATGAAGCTAATGAAGAGTCAGAACCAGAGGATGATGTTTGTGCGTTATGTGATAATGGTGGTAACCTTGTGTGTTGTGATGGAGCATGCAAGAGGTCATTTCATGCTACCGTGGAGCATGGTAGAGAATCTATGTGTGGTTCTCTTGGGCTTACCAAGAAGGAAGTTGATAAGAAGACCTTTTACTGCAAGAATTGTGAACACAAACAGCACCAATGCTTTGCGTGTGGAAAGTTGGGATATTCTGGTCTAGCTAAGGGTGCTGAGGTTATTCAGTGTGATTCTGCAACTTGTTACCATTTTTATCATCCGCATTGTGTTGCGAAGTTACTTCCTCAAGTAGTTAAGCATGATGTGGAGGGACTTGAGAGAAATATTGCTGATGGGAATCATTTTACGTGTCCTGTTCATTATTGCTGTGTCTGTAAAGAAGGGGAAAATAAGAAGGATCCTGAGTTGCAATTTGCTGTTTGTAGGCGTTGTCCAAAGTCATATCATCGCAAATGTTTGCCAAGAGAAATTTCTTTTGATGACGAAGATGATGAAGATATTATACCAAGGGCTTGGGAAGGTCTTTTATCAAACAACCGCATTCTTATATATTGCTTGAATCATGAGATTGATGATGAACTTGGGACCCCTATTAGAGATCATATTAAATTCCCCAATTTTAAAGTTATTGCTCGAGAAATTAATACTGCTAAGGAAAAGATGAAGCACCCAACCATAGATAGAGTAATATCGAACAAGAACAATGTTGACTTAGATAATTCATATGACAAAAGCACTGCTAAAGGCTCTAAAGTGACTGGAAAAGTGTCTCCGGGGAAAGTTGGAAGCAAGAAGTCTGAAAATGTTACTTCTAGTTCAGATATTTCAAGAAAATCAAAACGAAAAGAAACATCAAGAAGGTGCTCATTTGAGAATAAGAGGTCAATCTCAGAGAAATATGAAACGCCTAACAGTGAGGAAGACCAGACCTTATGTGCTCCCATAAATAAGGATTTTATGGGCATTAAGCTTGACATTCAGGGACCTCTATTAGATGCTGATTCCGAGAGGAGATTGTTGGCTTTGGTGGAAGAAGTTAAATCAGAAATTACACTGGACAGTGTTAAGAAACAATTTGCTTTTGATTATACTCCTTACCCGTTGAGAAAAGCAGAGAAGGCCATTATAAATGGGAAGCTGGAAGGCTCAGTTAATGCTGTTCAAACAGCTCTAAGGAAGCTAGAGGGCAGGTGCAACATTCAGGATGTACAAGCTGTTTGCAACCCTGATGTTGTGAAACAGACATTTAAGTGGAAGATTATTGATAGACTACATTGGTATGCTCAGAACGGTGATACCATTGTGGATTTTTGTTGTGGAGCTAATGATTTTTGCATCCTTATGAAGAAAAAGCTTGAAGAGAGTGGGAAGAAATGCTCATATAAAAACTATGATATACTTTCGACAAAGAATGATTTTAATTTTGAAAAGAGAGATTGGATGACTGTCCGTCCAAATGAACTACCAACGGGATCACAATTGATCATGTGCCTCAGCCCCCCTTTTGGAACTAAAAAAGCTTTGGCTAACAACTTTATAGATAAGGCTATTGAGCTTGAACCAAAGCTCCTAATTTTTATAGTACCACAAGAGGCAGAGAGGCTTGATAAAAAACTGTCGTCGTATGATCTTGTCTGGGAGGATGGGAATTTTCAGTCAGGCTTGTCTTTTGACATACCCGGATCAGTTGATGCAAATGACAAACAAGTCGAGCAGTGGAATTCGATGTCCCACGTACTCTCCTTTTGGAGCCGTCATGACTGGACTACTAAACACAAGGTGATAGCCCAGGAGCACGGTCATGTCTCCTACTCACATGAAGTATTAGAGATGGATACTAAAATGTTGCCTGCTGATTATGATAGAGATGGTAATAATGTTGACAAGCACATGCAAAGTTATGATCTTGTGCAGTCAACTGATGATAAAGAAGATGAAGCAACAACGGATGAAGGTAAGAAAAGCAGCTCACACCATGGTAATGTTGAACAAGAGAGTAAAGAGGAACCAGAATGTAGGAAAAGAAAGTCTGGGAAGACGTCACGGAAGAGGAAGCATGTTGGGGAAAATTATAGCTTAGCAGCCAAAAGGCAAGCTGTAAATGGAAAGACTAAGGAAGTAGCTAACCATAGACAACCCAATCCAAATAATGAGAAATCCTCAGCTGAGGGTTCTCAGCCGGCACCGGTTATCGCGTATCGAAATGTTGAGGTTAGTAATAAAAGTAGGATGAAAGAAGGGTCAAGTGTTGTGAGTGCCCATTCTGATTGTAGCAGCAGGGGCGAGAAAGAGAAGCAACAAAGAGAGTCAGATGAAAGGGAACCTGGTTCAGCAACCAAGCCATCTTATAAGTTAAATCATGTCAGGATGATGGGTTCAGAACCTCCTACAGTTAATAGAAATGGCACTTGTGATCGCAGTGTGCCCCAACCTGGATATGGTGTGACTAGGCAACTGACCTTTGCATCTGGTCCTAACCTTGAATATTCTCTGCGCCATTCAGTTGGTTGGCTTGATGAGTAG 3189 0.3957 MKKGMANSDDDDDEPQSLCLTNYHLDDDNDMPLSLIMLPIKWSESDEDDSIDDCKQKKVFIHGYLHPNRLKKMFPVKAWSFNLSSLKPILSLQTKDGNWIKLKSPRKSFEATIRTILITIHFLHYAKKYPKLSSSRSIWDNLSKVKELSSYKLKPSLSDLSNHMHLISEAAKRDDVLAKSKLLLTILEENPSNQKISDEKVRDMMDEANEESEPEDDVCALCDNGGNLVCCDGACKRSFHATVEHGRESMCGSLGLTKKEVDKKTFYCKNCEHKQHQCFACGKLGYSGLAKGAEVIQCDSATCYHFYHPHCVAKLLPQVVKHDVEGLERNIADGNHFTCPVHYCCVCKEGENKKDPELQFAVCRRCPKSYHRKCLPREISFDDEDDEDIIPRAWEGLLSNNRILIYCLNHEIDDELGTPIRDHIKFPNFKVIAREINTAKEKMKHPTIDRVISNKNNVDLDNSYDKSTAKGSKVTGKVSPGKVGSKKSENVTSSSDISRKSKRKETSRRCSFENKRSISEKYETPNSEEDQTLCAPINKDFMGIKLDIQGPLLDADSERRLLALVEEVKSEITLDSVKKQFAFDYTPYPLRKAEKAIINGKLEGSVNAVQTALRKLEGRCNIQDVQAVCNPDVVKQTFKWKIIDRLHWYAQNGDTIVDFCCGANDFCILMKKKLEESGKKCSYKNYDILSTKNDFNFEKRDWMTVRPNELPTGSQLIMCLSPPFGTKKALANNFIDKAIELEPKLLIFIVPQEAERLDKKLSSYDLVWEDGNFQSGLSFDIPGSVDANDKQVEQWNSMSHVLSFWSRHDWTTKHKVIAQEHGHVSYSHEVLEMDTKMLPADYDRDGNNVDKHMQSYDLVQSTDDKEDEATTDEGKKSSSHHGNVEQESKEEPECRKRKSGKTSRKRKHVGENYSLAAKRQAVNGKTKEVANHRQPNPNNEKSSAEGSQPAPVIAYRNVEVSNKSRMKEGSSVVSAHSDCSSRGEKEKQQRESDEREPGSATKPSYKLNHVRMMGSEPPTVNRNGTCDRSVPQPGYGVTRQLTFASGPNLEYSLRHSVGWLDE 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1595 1062 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 531 - -
Lal18g1595 1062 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 642 1021 - -
Lal18g1595 1062 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 545 641 - -
Lal18g1595 1062 SMART PHD_3 218 272 IPR001965 -
Lal18g1595 1062 SMART PHD_3 344 411 IPR001965 -
Lal18g1595 1062 SMART PHD_3 277 343 IPR001965 -
Lal18g1595 1062 CDD PHD3_NSD 343 376 - -
Lal18g1595 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 365 IPR013083 -
Lal18g1595 1062 PANTHER ENHANCED DOWNY MILDEW PROTEIN 5 531 - -
Lal18g1595 1062 PANTHER ENHANCED DOWNY MILDEW PROTEIN 545 641 - -
Lal18g1595 1062 PANTHER ENHANCED DOWNY MILDEW PROTEIN 642 1021 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 927 946 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 459 474 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 979 1000 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 856 1033 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 856 898 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 496 527 - -
Lal18g1595 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 274 IPR013083 -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 964 978 - -
Lal18g1595 1062 MobiDBLite consensus disorder prediction 459 529 - -
Lal18g1595 1062 SUPERFAMILY FYVE/PHD zinc finger 206 275 IPR011011 -
Lal18g1595 1062 CDD PHD2_NSD 277 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1595 Lal-Chr18 17458302 17465481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1595 207 319 PHD Transcription Factor Family AT3G14980 27.731 1.87e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1595 - - lang:109342095 1783.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1595 18 17458302 17465481 Lal18g1595 18 17458302 17465481 ECH