Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1593 ATGGCATCTTCTTCAGACTCGTGGTTAAAAGAATATAATGAAGCTTTGAAACTTTCTGATGATATCAATGTCATGATTTCTGTATCTAGATCACGATCAGATAAACGTCATCTTTCTGCTATAAGAAGGAAAATTACGATACTTGGGACAAGACTTGATACCTTGGATTCCATTTTGTCTAAGCTTCCCGAAAAACACTCTATATCTGATAGTGAGATTAATCGTCGCAAGGACTTGATTGCAAATTTGAGATCAAAAGTTGACCAAATGGTTTCCACATTGAATATATCAAACTTTGCAAATAGGGATGATTTGATTGGACCAGAAATAAAATCTGATGCAATCACCAGAACCGTTGGACTTGACAACAATGGACTAGTTGGACTTCAGCGCCAAATTATCAAAGAACAAGATGAGGGACTTGAGAAGTTGGATGAGACTGTAACAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAACTGGATCTCCACACTACACTCATTGATCACTTGGATCAACATGTTGATGTCACAGATTCTCGGCTGAGGAGGGTGCAGAAGAATTTGGCAGTATTAAATAAACGGACCAAGGGTGTTTGCTCCTGTTTGTGCATGCTTTTATCAGTGGTTGGTATAGTGGTTTTGGTTGTTGTTGTTTGGCTGCTGGTCAAATATTTGTAA 684 0.3801 MASSSDSWLKEYNEALKLSDDINVMISVSRSRSDKRHLSAIRRKITILGTRLDTLDSILSKLPEKHSISDSEINRRKDLIANLRSKVDQMVSTLNISNFANRDDLIGPEIKSDAITRTVGLDNNGLVGLQRQIIKEQDEGLEKLDETVTSTKHIALAVNEELDLHTTLIDHLDQHVDVTDSRLRRVQKNLAVLNKRTKGVCSCLCMLLSVVGIVVLVVVVWLLVKYL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1593 227 SUPERFAMILY SNARE fusion complex 122 192 - -
Lal18g1593 227 PANTHER SYNTAXIN 1 220 IPR045242 -
Lal18g1593 227 CDD SNARE_Qc 134 191 - -
Lal18g1593 227 Pfam SNARE domain 167 219 IPR000727 -
Lal18g1593 227 Gene3D - 133 195 - -
Lal18g1593 227 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 131 193 IPR000727 -
Lal18g1593 227 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 220 - -
Lal18g1593 227 SMART tSNARE_6 126 193 IPR000727 -
Lal18g1593 227 SUPERFAMILY t-snare proteins 35 95 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1593 Lal-Chr18 17452477 17454375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1593 1 227 SNARE and Associated Proteins AT1G79590 64.957 1.44e-103 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1593 K08503 - gmx:100782666 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1593 18 17452477 17454375 Lal18g1593 18 17452477 17454375 ECH
Lal3g0835 3 7606357 7612431 Lal18g1593 18 17452477 17454375 PCT
Lal11g0714 11 6994682 6998600 Lal18g1593 18 17452477 17454375 PCT
Lal18g1593 18 17452477 17454375 Lal3g0835 3 7606357 7612431 PCT
Lal18g1593 18 17452477 17454375 Lal11g0714 11 6994682 6998600 PCT