Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1589 ATGGGGTTGCTTCTTCAATCAATAGCTTTGTCTCTAATTTTGTTCATTAACTTCTCAATGAGGCTAAGTGAAGCCAATGACTGTGGAGGAATGAATATTGCATATAATATCACAGTTGATCAACATGATAATGGAGCATTCCAAACTATTCAAGCTGCTATTGATTCTATAAAGAGCCCTAATGATGAATGGGTTAAGATTCACATAAATGCTGGCACATACATGGAAAAGGTTCAAATTCCTGAAGATAAGCCATGTGTTTTTTTAGAAGGAGATGACATGAGTAGCACAATAGTCACATATGGTGACCATGAACAAACAGACTCAAGTGCTACATTTACATCAATTCCATCCAATGTCATTGTGACTGGTATAACTTTTAAGAACTCGTATAATTTGGGACCACCATCTTCTAAATTGAGCTATATGACAAAGGAATCAATTGATAATATTAAACCAGCTGCAGCAGCAAGAGTATATGGAGAGAAATCTTACTTCTACAAGTGTGGGTTTTGGGGTTATCAAGATACTTTGTTTGATCAATTGGGACGCCATTACTTCAAAGATTGTTACATCCAAGGTGAAGTTGATTTCATCTTTGGTTATGCCCAATCCATTTATGAGAATTGCTGGATAAATGCAACACAGGGGGAATTAAAATCACCTGGTTATGTAACAGCACATGGGAGGACATCATCAACAGACCCAGGTGGTTTTGTATTTTTAAAAGGATACCTTATTGGGAATGGTAAAGTTAATCTTGGAAGAGCATGGGGCCCTTACTCTAGAGTTATATTTCATAGAATGTACATGTCTTCAGTCGTAATTCCTCAAGGATGGGATGCATGGGATTTCACAGGCCATGATGTGGTTGGTGGTCGTGTTCCAAAGTCCATGGAGCTGTGTACTCAAACCTTCATCCATTTCAATGCTTCTTCTCTCTCTTCCTTCTCTTCAACTTCTAACTCTCTTCTTCTTCTTCTTCGTCCTAACACTTTGCCCTTCAAATCCAATTATTCCTTAAACCTCTCATCTCATTATCATCACACTCACAATTCTTCTCCCTTCATAGTTTCAGCTTCTTCTCCTTCTTCAGTTGCTGTTGGCACAGAAAATGACCGTCTTCCCGCGGAATTGAAAGTTACACAAACAGAGGGACCCAATTCCACTGTTAGATTGCATGTGGAGGTTCCACCACTAGTATGCCAGGATTGTTACAAGAGGGTTATAGTCGAGTTTACAAAGCAAGCAAAGATCCCAGGATTTCGCCCTGGAAAGAGCGTTCCGGAAAGTATTCTTGTTGGTTATGTTGGGAGTAAAAATGTTAAGAAGGCCACCATTGAATCTATATTGAGGAGGACACTTTCACATGCTATGGCATCGGTTACTGGAAAGGCTTTGCAGGACTCTGTACGTATAGCGACTAAGTTTTCCGAGATGGAGGAGACATATTCTTCCCTTGGGTCTCTTAGGTTTGATGTCATTGTTGATGTTGTACCTGAAATCAAATGGATTTCTGATAATGCACACAAAAATTTGAAGGTTGTTGTTGAAATAGATAGTGACATTGATGCTCACAAGACATTTGAACAAGAATTTAGAAGGCGTTACAAGTCCCTTGGTGCACTGAAAGTTGTTACTGACAGAGGCCTACAGATTGGTGATGTTGCCGTCATTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATATTAAAAATATTCCTTCTGCTGAAAGCAAAGGATTTAATTTCGATACAGAAGATGGCGACAATGTTTTACCTGGCTTCCTTGATTCTATAATTGGAATTTGTCGAGGAGAAACAAAGTCTTTTCCTCTTGTATTTCCTGAAAATTGGAAGCAAGAAAATCTTCGCGGTGTTCATGCTCAGTTCACTGTCGAGTGCAAAGAACTTTTTTACAGAGATTTACCAGAGCTGGATGATTCCATTGCCGATAAGCTTATCTCTGGATGCACCACAGTGGATCAGGTCAAAGAGCTATTGTTACAGAGATGTTTTGAAGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAAACCAACTTTCTAAGATGGTAGAAATTGATATACCCCAATCCTTGTTTGAAGAGCAAGGTAGGCAACTTTATGGAGCCAGCCTATTAGAGATACAGGCAAAAATGACGTTAAACGAACAGCAGCTGGCATCTCTATCTAGTCCAAAGGCTGTGAGCGAATATCTTCACCATCAGAAGGACAATATAACAAATTTGATAAAACAAAATCTGGCAGTTGGTGATGTATATAGGCGTGAAAATCTGCAGGTTGCTACCGAGGAACTCGTCAAAGAGGTTGAGAATTCTATTGCAGAATTTAAACGTCAAAACCAAGAATATGATGAGGGACGAGTGAAGGATCAGGTCCAAGAAATACTAGAAGGAGCTAAGGTGCTTGAATGGTTGAGAGAACATGCAGATATTCAGTATGTAACCAAATGA 2493 0.3927 MGLLLQSIALSLILFINFSMRLSEANDCGGMNIAYNITVDQHDNGAFQTIQAAIDSIKSPNDEWVKIHINAGTYMEKVQIPEDKPCVFLEGDDMSSTIVTYGDHEQTDSSATFTSIPSNVIVTGITFKNSYNLGPPSSKLSYMTKESIDNIKPAAAARVYGEKSYFYKCGFWGYQDTLFDQLGRHYFKDCYIQGEVDFIFGYAQSIYENCWINATQGELKSPGYVTAHGRTSSTDPGGFVFLKGYLIGNGKVNLGRAWGPYSRVIFHRMYMSSVVIPQGWDAWDFTGHDVVGGRVPKSMELCTQTFIHFNASSLSSFSSTSNSLLLLLRPNTLPFKSNYSLNLSSHYHHTHNSSPFIVSASSPSSVAVGTENDRLPAELKVTQTEGPNSTVRLHVEVPPLVCQDCYKRVIVEFTKQAKIPGFRPGKSVPESILVGYVGSKNVKKATIESILRRTLSHAMASVTGKALQDSVRIATKFSEMEETYSSLGSLRFDVIVDVVPEIKWISDNAHKNLKVVVEIDSDIDAHKTFEQEFRRRYKSLGALKVVTDRGLQIGDVAVIDISATTIDQDESNIKNIPSAESKGFNFDTEDGDNVLPGFLDSIIGICRGETKSFPLVFPENWKQENLRGVHAQFTVECKELFYRDLPELDDSIADKLISGCTTVDQVKELLLQRCFEVEQTAREQATDNAILNQLSKMVEIDIPQSLFEEQGRQLYGASLLEIQAKMTLNEQQLASLSSPKAVSEYLHHQKDNITNLIKQNLAVGDVYRRENLQVATEELVKEVENSIAEFKRQNQEYDEGRVKDQVQEILEGAKVLEWLREHADIQYVTK 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1589 830 SUPERFAMILY Pectin lyase-like 33 285 IPR011050 -
Lal18g1589 830 Hamap Trigger factor [tig]. 379 826 IPR005215 GO:0015031
Lal18g1589 830 Pfam Bacterial trigger factor protein (TF) 380 518 IPR008881 GO:0006457|GO:0015031
Lal18g1589 830 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 648 828 IPR027304 -
Lal18g1589 830 SUPERFAMILY Trigger factor ribosome-binding domain 379 510 IPR036611 GO:0006457|GO:0015031
Lal18g1589 830 Pfam Bacterial trigger factor protein (TF) C-terminus 662 819 IPR008880 GO:0006457|GO:0015031
Lal18g1589 830 Gene3D - 520 825 IPR037041 GO:0006457|GO:0015031
Lal18g1589 830 Gene3D - 30 313 IPR012334 -
Lal18g1589 830 Gene3D - 539 646 IPR046357 GO:0003755
Lal18g1589 830 Coils Coil 769 800 - -
Lal18g1589 830 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 364 829 - -
Lal18g1589 830 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 364 829 IPR005215 GO:0015031
Lal18g1589 830 Pfam Pectinesterase 36 284 IPR000070 GO:0030599|GO:0042545
Lal18g1589 830 SUPERFAMILY FKBP-like 544 649 - -
Lal18g1589 830 Gene3D - 377 502 IPR036611 GO:0006457|GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1589 Lal-Chr18 17428019 17434412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1589 33 289 Carbohydrate Esterase AT2G19150 47.893 5.85e-73 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1589 K03545 - gmx:100805543 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1589 18 17428019 17434412 Lal18g1589 18 17428019 17434412 ECH