Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1584 ATGAGGAAAAGACCGGCGGCCATGGCGGCGATGGAGTTGGTACCTCCGGTGGAGCCACGGTACCGTGGCGTCAGAAAGAGGCCGTGGGGGAGATTCGCGGCTGAGATCAGAGACCCAATAAAGAAAGCACGGGTATGGCTTGGGACATTCGATTCCGCTGAGGAAGCAGCGCGTGCGTACGACGCGGCGGCTGTATCCCTCCGTGGTCCCAAAGCCAAAACAAACTTCCCGATCAACCCTTCACCATTTTATCACCACCACGCCAATGACCCATACTTCGATCACCACCGTTACTACGCCACCGCCGCCAACAACGGCGTTGGTGGTTTTAATGACCATGGTGTTATTAACCCTCATAGACCAGCCTCTAGTGGTATGAGCAGCACCGTTGAGTCCTTCAGCGGCCCTCGTCCTCCGCCTGCCGTCCCTCCGCCGCAGATGACAAGAAGATATCCTCGTACTCCGCCGCTTGTGGCGGAAGATTGCCATAGCGACTGCGACTCATCATCGTCGGTTGTTGATGATGGAGACGACATCGCTTCGTCGTCGTTTAAAGCGCCGTTACCGTTTGATCTTAATGTGTTGCCGTTAGATGTTGATGTTGAGGTGGCTAACGGTGACGATGAGCTTCACCGTACCGCTCTTTGCCTCTGA 654 0.5566 MRKRPAAMAAMELVPPVEPRYRGVRKRPWGRFAAEIRDPIKKARVWLGTFDSAEEAARAYDAAAVSLRGPKAKTNFPINPSPFYHHHANDPYFDHHRYYATAANNGVGGFNDHGVINPHRPASSGMSSTVESFSGPRPPPAVPPPQMTRRYPRTPPLVAEDCHSDCDSSSSVVDDGDDIASSSFKAPLPFDLNVLPLDVDVEVANGDDELHRTALCL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1584 217 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lal18g1584 217 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lal18g1584 217 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lal18g1584 217 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Lal18g1584 217 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lal18g1584 217 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Lal18g1584 217 PANTHER ETHYLENE RESPONSE FACTOR 18 197 - -
Lal18g1584 217 MobiDBLite consensus disorder prediction 121 148 - -
Lal18g1584 217 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lal18g1584 217 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Lal18g1584 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1584 Lal-Chr18 17409696 17410349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1584 18 217 AP2-EREBP Transcription Factor Family AT3G20310 57.391 2.39e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal18g1584 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1584 K09286 - gmx:100803943 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1584 18 17409696 17410349 Lal18g1584 18 17409696 17410349 ECH
Lal3g0857 3 8009899 8010579 Lal18g1584 18 17409696 17410349 LSH
Lal18g1584 18 17409696 17410349 Lal22g0065 22 393726 394337 LSH
Lal18g1584 18 17409696 17410349 Lal6g0066 6 400589 401212 LSH
Lal3g0857 3 8009899 8010579 Lal18g1584 18 17409696 17410349 PCT
Lal18g1584 18 17409696 17410349 Lal18g1584 18 17409696 17410349 PCT
Lal18g1584 18 17409696 17410349 Lal22g0065 22 393726 394337 PCT
Lal18g1584 18 17409696 17410349 Lal6g0066 6 400589 401212 PCT
Lal18g1584 18 17409696 17410349 Lal3g0857 3 8009899 8010579 PCT
Lal22g0065 22 393726 394337 Lal18g1584 18 17409696 17410349 PCT
Lal6g0066 6 400589 401212 Lal18g1584 18 17409696 17410349 PCT