Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1580 ATGGCTGCCACATGGAATGATGCCATTGCCGTGGCTGATGAGCCTACTGCCTCACATTCTAATTCACAACTCATGTCGTTTAGTCATAAACGACTAGCCTTGGATGAGATGGATTTCTTCGCTGAGAATAAGAAAACGAACCAAGATGATCACGGTGATGATCATCAAATGCTGCACCGTATAGAGGTTAATGTAGATACTAGCTTAGATCTTCTAACAAAGAATACTGGTGGCAAGAGATCAATCAAGGGAGATGGGGATGATGAGAGAAATGAGCTTGCTGCATTGCTAGCTGAATTGCAGGATATGAATGCTGAAAATCTACGTCTGAGAGAGCTGGTTGATCAGGTCATCAATGACTACAATACCCTACACTTGCAACTTATCAAGATGATGCAGACACAGCATAGCCATGGGGGTGAACAAGCCATAGAGGAGAAGGGTAAGAAAGAAGGTAAGGTTCCAAGGCCATTTTTAGAGATGGGTGGTTTTGGTGGAAGGGATAAAGCTTTCCAACAATCTTTGGAGGGAAGCAAAAACTTGGTTGAATTGATGGAGAACAAGAATGTTCAGCAGATTTGCACCACAAGAGACAATATTGTCTTGGAACGAAATAAGGATAATAATTCAAAAGCAAGAATAATGGAGGAGAGCACTAGTGACCAAGCATTCCAATTAGGGTGGCTCTCTAATAAAGTTCCTAGGTTAAATTATTTAATGGATCATGTTGATCAACCATCTGAAACCATGTCAATCATCAAGAAAGCTCGTGTATCAGTTCGAGCCAGATCAGAATCTTCAATGATAGCAGATGGATGCCAATGGAGAAAATATGGGCAAAAGATGGCGAAAGGGAATCCATATCCGCGAGCTTATTATCGTTGCACCATGTGTACTGGTTGTCCAGTACAAAGGTGTGGTGAAGACAGAAGTGTGTTGATCACTACATATGAAGGGCAACATAACCATCCGCTCCCTCCAACTGCAAAGGCAATGGCTTCAACCACATCTGCAGCAGCATCAATGCTTCTTTCAGGATCAATGCCAAGCGCTGATGGCCTAATTAATCCAACCATATTAGAAAGTGCTGCACTTTCTTATTCACACAACAACATGGCTACTCTCTCTTCCTCAGCTCCATTTCCAACTATCACATTAGATCTCACTCAAGAAAGTGCTACCCATTCCTCATCATCACACCAACAAAAGGACAATCTTAGTCTTCTAAACAAGTTTATGTCAGTTTCATCATTTACTGACTCAGTTAATGCAGCTACAGCTGCTATCACTGCAGATCCTAACTTCACATCAGCTCTAGTTGCTGCTATAACATCTATCATTGGAAGGTCACATCTAAATAACAGGGATACCAATAATACAAGTGGAGATCAGTAG 1395 0.4165 MAATWNDAIAVADEPTASHSNSQLMSFSHKRLALDEMDFFAENKKTNQDDHGDDHQMLHRIEVNVDTSLDLLTKNTGGKRSIKGDGDDERNELAALLAELQDMNAENLRLRELVDQVINDYNTLHLQLIKMMQTQHSHGGEQAIEEKGKKEGKVPRPFLEMGGFGGRDKAFQQSLEGSKNLVELMENKNVQQICTTRDNIVLERNKDNNSKARIMEESTSDQAFQLGWLSNKVPRLNYLMDHVDQPSETMSIIKKARVSVRARSESSMIADGCQWRKYGQKMAKGNPYPRAYYRCTMCTGCPVQRCGEDRSVLITTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSADGLINPTILESAALSYSHNNMATLSSSAPFPTITLDLTQESATHSSSSHQQKDNLSLLNKFMSVSSFTDSVNAATAAITADPNFTSALVAAITSIIGRSHLNNRDTNNTSGDQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1580 464 Pfam WRKY DNA -binding domain 271 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1580 464 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 15 457 IPR044810 GO:0003700
Lal18g1580 464 SUPERFAMILY WRKY DNA-binding domain 262 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g1580 464 SMART WRKY_cls 269 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal18g1580 464 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 15 457 - -
Lal18g1580 464 Coils Coil 86 120 - -
Lal18g1580 464 Gene3D WRKY domain 254 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal18g1580 464 ProSiteProfiles WRKY domain profile. 264 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1580 Lal-Chr18 17391291 17394808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1580 92 447 WRKY Transcription Factor Family AT4G04450 40.587 3.80e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal18g1580 WRKY 4.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1580 - - adu:107496306 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1580 18 17391291 17394808 Lal6g0068 6 405122 408042 LSH
Lal18g1580 18 17391291 17394808 Lal18g1580 18 17391291 17394808 PCT
Lal18g1580 18 17391291 17394808 Lal6g0068 6 405122 408042 PCT
Lal6g0068 6 405122 408042 Lal18g1580 18 17391291 17394808 PCT