Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1566 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGGAAGAGATTCAAGATTCTATCGATAAGTTGCAATCTACTTTTCAACAATGGGAAAACACTCCTGATGCTGGGGAGCGATCACATCTTTCAAAGGAAGTTCTTACCGGTTGTGAAAGTATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAACCGTAAGAGGTGGACCAGCAGTGCTCGTGCCCAGGTGCGGACAGTGAAGAAAGCTGCTGAAGCTGAAAAGGGCTCAAATAAAACAAACCATGCTAGTGTCAATGGGATGCACAGGGAATTAATGAGGCATCCTAATTCTCATCAATCTGATATAACCAACAAATATGTTACCCAGGATAATGATGACTTCATAGAATCAGAATCAGATAGACAGATGCTTCTTATAAAGAAGCAGGATGAGGAGTTGGATGAGCTTACTTTGAGTGTACAAAGAATTGGAGGTGTTGGACTTACAATACACGAAGAGCTCCTAGCACAGGAAAAGATTGTAGATGAGCTTGGTTCTGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTGGGAATGATCATGAAGAAGGCTAGTACAAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCTTTGTTCATTTTCCTCTTTATATTGGTATTCTTCACTTAG 741 0.4103 MPSAQDPFYVVKEEIQDSIDKLQSTFQQWENTPDAGERSHLSKEVLTGCESIEWQVDELDKAIAVASRDPSWYGIDEVEIENRKRWTSSARAQVRTVKKAAEAEKGSNKTNHASVNGMHRELMRHPNSHQSDITNKYVTQDNDDFIESESDRQMLLIKKQDEELDELTLSVQRIGGVGLTIHEELLAQEKIVDELGSEMDSTSNRLDFVQKKVGMIMKKASTKGQIMMILGLLALFIFLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1566 246 Pfam SNARE domain 191 242 IPR000727 -
Lal18g1566 246 Gene3D - 161 225 - -
Lal18g1566 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Lal18g1566 246 Coils Coil 12 32 - -
Lal18g1566 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Lal18g1566 246 CDD SNARE_Qc 157 213 - -
Lal18g1566 246 Gene3D - 2 104 - -
Lal18g1566 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Lal18g1566 246 Coils Coil 192 212 - -
Lal18g1566 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Lal18g1566 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Lal18g1566 246 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Lal18g1566 246 SMART tSNARE_6 149 216 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1566 Lal-Chr18 17319092 17322924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1566 55 246 SNARE and Associated Proteins AT1G28490 66.667 1.08e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1566 K08500 - gmx:100793612 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0904 3 9133614 9145416 Lal18g1566 18 17319092 17322924 LSH
Lal3g0904 3 9133614 9145416 Lal18g1566 18 17319092 17322924 PCT
Lal18g1566 18 17319092 17322924 Lal18g1566 18 17319092 17322924 PCT
Lal18g1566 18 17319092 17322924 Lal3g0904 3 9133614 9145416 PCT