Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1564 ATGCCTATTACCAACACTTCTCCAACTATGACTAACTGGTTTTCTAGAATTGTAGAAGCAGTAACAAGGTGTAAGGAAAAAATTTCTTCATCAGTTTTTGCTGGCCTTTATGGTTCTGCAGTTGGAGTATTCATGATAGTTCTGGAGAGAGTTCTTTTTGCTGCATTTACTTGTACTCTAGCACTTGGAGGGTCAATCATAGGAACAATTGCAGGAGCAATCAGAGGTCAAACAACAGAAGCTGGTTTTCTTGATGGTGCTGGCAAAGGAACAGTCATAGGAGCCATTGCGGCTATAGAATTGGTTAATTATGCTGCTGTTGGTGAGCCATTATCAGAGGTCACTATGTTAAGCAGTTTCTTGAATGGAAAAGTGTTTATAGAATGGATATGTCCAGCTGCTGCACATGCCTATGAGTTGCATCATATAAACAGACCAGAAACAAGTTACAGAGAAGTATCAAATATTTATGATAATTTTGAAGTTGGAGTCAAAGGGATGCACCAAAATTATATTCTAAAGCTTCCTTTTGAGCAATACAACACAAGCAAAATGTTGAAATTGTACAATAAGATAAGCTGCTCAATTTGCTTACAGGATTTTGAGGATGGAGAATTGGTGAACATACTTCCAAAATGTGGCCACCTTTTTCATTTAGAATGCATAGAGAAATGGCTAATTCAACAAGGATCATGCCCAATGTGTAGAACTTATGTTCATCACCACATTCATGAATAG 738 0.3753 MPITNTSPTMTNWFSRIVEAVTRCKEKISSSVFAGLYGSAVGVFMIVLERVLFAAFTCTLALGGSIIGTIAGAIRGQTTEAGFLDGAGKGTVIGAIAAIELVNYAAVGEPLSEVTMLSSFLNGKVFIEWICPAAAHAYELHHINRPETSYREVSNIYDNFEVGVKGMHQNYILKLPFEQYNTSKMLKLYNKISCSICLQDFEDGELVNILPKCGHLFHLECIEKWLIQQGSCPMCRTYVHHHIHE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1564 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 239 - -
Lal18g1564 245 CDD RING-H2_PA-TM-RING 194 236 - -
Lal18g1564 245 Pfam Ring finger domain 193 236 IPR001841 -
Lal18g1564 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 241 IPR013083 -
Lal18g1564 245 SUPERFAMILY RING/U-box 186 241 - -
Lal18g1564 245 SMART ring_2 194 235 IPR001841 -
Lal18g1564 245 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Lal18g1564 245 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 239 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1564 Lal-Chr18 17308305 17310029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1564 47 239 C3H Transcription Factor Family AT5G66070 34.975 9.44e-35 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1564 18 17308305 17310029 Lal18g1564 18 17308305 17310029 ECH