Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1560 ATGAGAAGACCCAAATCAAAAGATTTCAAGAAGCAACAACGAATTTCAGAAGAAACTGAGATAGAGTTATTGACGTCATGGATCGAAACACAACAAGTAGACTCTGGTTCAAACCCAATGTCACTCCCTCCACTTCCAAAAAACGCACCCATTGGGCGCTTAAACGACACCGCATTTTCCCGGTACGGTGGTGTGTCGAATTTCAATCAGCTTCCACTATCAAAGAAAACGAAGGATGGTTTGAAAGATGGAAAGTTCGTGAACATGACAGATATACAGAGGGCGTCTCTTCCTCACGCGCTCTGTGGACGTGACATTCTCGGTGCTGCAAAAACTGGTTCTGGAAAAACCCTTGCTTTCATCATTCCTGTGTTAGAGAAGCTATACAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCTCCTACAAGGGAATTAGCTGGTCAGCTGTTTGATGTACTGAAGTCTGTCGGGAAGCACCATAATTTTAGTGCTGGACTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAGGAACGTGTCAATGAACTTAACATATTGATCTGCACGCCCGGTCGCCTTCTGCAGCACATGGATGAAACTCCCAATTTTGATTGTTCTCAGATGCAGGTTTTGGTGCTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAGGGAACTAAATGCAATCATCTCACAACTACCAAAGCGTAGGCAAACCTTGCTTTTCTCAGCAACTCAAACTAAATCAGTTCAAGATCTTGCAAGGCTTAGTTTGAAGGACCCAGAGTATCTGAGTGTTCACGAAGAGTCTGCGACTGCTACTCCTACTCTCTTGAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTAGATATGCTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAATACTTGTCTTTCTTTCAAGCTGCAAGCAGGTGAAGTTTGTCTATGAAGCATTTAAGAAACTTCACCCCGGTATACCATTGAAGTGTCTTCATGGGAGGATGAAACAGGAAAGAAGGATGGCCATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTGCACCGATGTGGCTGCAAGAGGACTTGACTTCAATAAGGCAGTTGATTGGGTTGTTCAGGTGGATTGTCCAGAAAATGTGGCATCTTACATACACAGAGTTGGTCGTACTGCTCGTTATAAATCTGGTGGGAAGTCAGTTTTATTTCTATTGCCCTCTGAAATTCAGATGCTTGAAAAGTTTAATGCAGCAAAAGTTCCAGTACATTTTAATAAGCCAAGGAAAGAACTTCTGCAACCAGTTTCTGCTTTGTTGGCATCTTTGCTGGCCAAGTACCCAGACTTGCAGCCTCGCGCTCAAAGGGCATTCATCACATATTTGAGATCCATACATCTCCAAAAGGACAAAGAGATATTTGATGTTATGAAACTACCTATTGATGAATATTCAGCATCATTAGGTTTGCCAATGACTCCCAAAGTCCGTTTTCTTAACCAGAAAATTAAATCTAAGGCTGTTTCAAAAGAACAAATATTAGCTGAACCTGAGAGCCCAAAGAAAGAAAATGCATTGATGGTCTCAAAAAAGAGGATAGCCACAGATGATTCTGAGGATGAGGAAGAAGAAAATGATCTTCTTTTGGCAGCAGATACCTTAAATGAAGATGGTGAAGTGAAGGCATCTGAAATTGGAGAAGTCATACCTGCAACTCGCGTGTCGAAGAAAAAGAAGCTCAAGATTAATGTACATAGACCACTGGGGACTAGGGTTGTATTTGATGATGAAGGCAATACTCTTCCTCCATTAGCTAGGATTGCTGACACGCAAAGCGGCAAGGAATCAATGCTTCTTGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGATAAGCTTGTCGATCGTCAGCGTCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTTGAAGGAAGTGGATGAAGAAGATGATACTTCTGGGTCAGAAGGAGAAGAAATTGTTGATAGACGGAATAAAAGGAAGAAAGTATACTTTGATAGTGATAGTGAAGATGGTGGCCGAAATGAAGGGAAAGTAGGTGTTACTTTGGAGGAACAGGAAGCGCTGGCTTTGAAATTGTTAGATTCCATGCAATCATAG 2211 0.4215 MRRPKSKDFKKQQRISEETEIELLTSWIETQQVDSGSNPMSLPPLPKNAPIGRLNDTAFSRYGGVSNFNQLPLSKKTKDGLKDGKFVNMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTLLFSATQTKSVQDLARLSLKDPEYLSVHEESATATPTLLKQIVMVVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVYEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFCTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKFNAAKVPVHFNKPRKELLQPVSALLASLLAKYPDLQPRAQRAFITYLRSIHLQKDKEIFDVMKLPIDEYSASLGLPMTPKVRFLNQKIKSKAVSKEQILAEPESPKKENALMVSKKRIATDDSEDEEEENDLLLAADTLNEDGEVKASEIGEVIPATRVSKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKESMLLDPEQKAEYYRRMREDLKKADKEDKLVDRQRRREKRIKQKMKLKEVDEEDDTSGSEGEEIVDRRNKRKKVYFDSDSEDGGRNEGKVGVTLEEQEALALKLLDSMQS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1560 736 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 58 523 - -
Lal18g1560 736 Gene3D - 55 278 IPR027417 -
Lal18g1560 736 MobiDBLite consensus disorder prediction 687 718 - -
Lal18g1560 736 CDD DEADc_DDX10 77 275 - -
Lal18g1560 736 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Lal18g1560 736 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Lal18g1560 736 SMART ultradead3 85 289 IPR014001 -
Lal18g1560 736 SMART DUF4217_3 447 510 IPR025313 -
Lal18g1560 736 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Lal18g1560 736 Gene3D - 283 544 IPR027417 -
Lal18g1560 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Lal18g1560 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 426 IPR027417 -
Lal18g1560 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lal18g1560 736 MobiDBLite consensus disorder prediction 668 718 - -
Lal18g1560 736 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Lal18g1560 736 CDD SF2_C_DEAD 286 417 - -
Lal18g1560 736 PANTHER RNA HELICASE 58 523 - -
Lal18g1560 736 SMART helicmild6 325 408 IPR001650 -
Lal18g1560 736 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1560 Lal-Chr18 17287102 17292221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1560 65 425 Eukaryotic Initiation Factors Gene Family AT3G19760 28.415 9.15e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1560 K14776 - gmx:100792106 1188.71