Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1554 ATGAGCTTCTTTTCATGCTGTGCTTCACAAGAGAAGCTTGACAAAAAGTCATTGAAGAAGAGCATTCAGGACTACCATGATGCAAAAACCCTACCATCATTTGCCAACATATCTTTTAAAACTGACAGTGGCAAGAGAAAGTATATAGAAGATGAAATAGCAAAAATGGGAAAAGGAAATATGACCTCTCATATATTTTCTTATCGCGAGCTATCGGTCGCAACTCAGAACTTTCACCCTAACAAAATGATTGGGGAAGGAGGCTTTGGAAGAGTATACAAAGGACGCATGAAAAGCACAAATCAAGTTGTTGCTGTGAAGCAACTTAACAGGAATGGATTTCAAGGAAACAGGGAATTCTTGGTTGAGGTTTTGATTTTGAGTCTCTTGCATCACCCTAACCTTGTCAATTTAGTAGGGTATTGTGCTGATGGTGAACAAAGGATTTTGGTATATGAGTATATGGTAAATGGTTCTTTAGAAGATCACCTTCTTGAGCTGGGTCCAGAGAGAAAGGCTTTGGAGTGGCATACTAGAATGAAAATAGCACAAGGTGCAGCAAAAGGGCTTGAATATTTACATGATGTAGCAAACCCTCCAGTGATATATCGTGATTTCAAAGCATCAAACATACTATTAGATGAAAACTTCAATCCAAAGCTATCTGATTTTGGACTAGCAAAGCTTGGTCCAACAGGTGATAAAACACATGTATCCACAAGGGTGATGGGAACTTATGGCTATTGTTCTCCTGAGTATGCCTCAACAGGTCAGTTAACTACTAAATCAGATGTATATAGCTTTGGAGTAGTCTTTTTGGAGATGATCACAGGAAGAAGAGTAATTGATCATTCAAGACCTTATGAAGAACAAAACTTAGTCACTTGGGCACAGCCACTATTCAAAGACAGGAGGAAATTTACATCAATGGCTGATCCATTGCTAGAAGGGAAGTACCCTATAAAGGGTCTATATCAAGCACTAGCAGTTGCAGCAATGTGTCTTCAGGAGGAAGCAGATACAAGACCTTTGATTAGTGATGTAGTTACAGCTCTTGATGTTTTAGCAACTAAGCATGCAGAAGTGGCAAAAGATATTTACTCTGAAGTTTGA 1113 0.3881 MSFFSCCASQEKLDKKSLKKSIQDYHDAKTLPSFANISFKTDSGKRKYIEDEIAKMGKGNMTSHIFSYRELSVATQNFHPNKMIGEGGFGRVYKGRMKSTNQVVAVKQLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGEQRILVYEYMVNGSLEDHLLELGPERKALEWHTRMKIAQGAAKGLEYLHDVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCSPEYASTGQLTTKSDVYSFGVVFLEMITGRRVIDHSRPYEEQNLVTWAQPLFKDRRKFTSMADPLLEGKYPIKGLYQALAVAAMCLQEEADTRPLISDVVTALDVLATKHAEVAKDIYSEV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1554 370 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lal18g1554 370 Gene3D Transferase(Phosphotransferase) domain 1 155 369 - -
Lal18g1554 370 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1554 370 PANTHER OS07G0668900 PROTEIN 1 365 - -
Lal18g1554 370 CDD STKc_IRAK 84 353 - -
Lal18g1554 370 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
Lal18g1554 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lal18g1554 370 SUPERFAMILY Protein kinase-like (PK-like) 61 350 IPR011009 -
Lal18g1554 370 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 365 - -
Lal18g1554 370 Pfam Protein kinase domain 79 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1554 Lal-Chr18 17247291 17249783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1554 60 357 Glycoside Hydrolase AT3G07070 71.812 2.88e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal18g1554 Pkinase 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1554 - - gmx:100798032 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1554 18 17247291 17249783 Lal18g1554 18 17247291 17249783 ECH
Lal18g1554 18 17247291 17249783 Lal18g1554 18 17247291 17249783 PCT