LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g1540	ATGGAGTTTGATACGAATATGGAAGCAGGAACAGAAGGGTGTTCTTCTAATAATCAGAAAAAAACTGGAAGAGGGAAAATAGAAATCAAAAGGATTGAGAACACAACAAATAGGCAAGTTACTTTCTGCAAGCGCCGAAATGGGTTGCTGAAGAAAGCATATGAACTATCAGTATTGTGTGATGCAGAAGTTGCTCTTGTTGTTTTCTCTAACCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTTAGAGGAACTATTGAAAGATACAAAAAAGCATCTGCTACTTCCACAAACGCAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAGTCATCCAAATTAAAAAGACAGATCCGAGACATTCAGAATTTAAACAGACACATCCTTGGTGAATCACTTAGCTCTCTGAGTCTAAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGACGTCGAGTTCATGCAAAAGCGGGAAGTTGAGCTACAAAACCATAATAATTTTCTGCGAGCTAAGATAGCTGAATATGAGAGAGCACAACAACAGCAACAAAATATGGTGCAGCAGGGAAATGTATGCGACACCATAGCATCACAACCATATGACAGGAATTTCTTCCCAGTAAATCTCTTAGATTCCAATCATCAATATTCGCCTCAGGACCACACTGCTCTCCAACTTGTGTAA	744	0.3884	MEFDTNMEAGTEGCSSNNQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVRGTIERYKKASATSTNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGESLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREVELQNHNNFLRAKIAEYERAQQQQQNMVQQGNVCDTIASQPYDRNFFPVNLLDSNHQYSPQDHTALQLV	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g1540	247	ProSitePatterns	MADS-box domain signature.	24	78	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	SMART	madsneu2	22	81	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	Coils	Coil	178	208	-	-
	Lal18g1540	247	Coils	Coil	142	162	-	-
	Lal18g1540	247	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lal18g1540	247	Coils	Coil	111	131	-	-
	Lal18g1540	247	ProSiteProfiles	MADS-box domain profile.	22	82	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	17	239	-	-
	Lal18g1540	247	CDD	MADS_MEF2_like	23	97	IPR033896	GO:0000977\|GO:0045944
	Lal18g1540	247	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	31	78	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	Gene3D	-	34	132	IPR036879	GO:0003677\|GO:0046983
	Lal18g1540	247	ProSiteProfiles	K-box domain profile.	108	198	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal18g1540	247	Pfam	K-box region	106	192	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal18g1540	247	PRINTS	MADS domain signature	24	44	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	PRINTS	MADS domain signature	44	59	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	PRINTS	MADS domain signature	59	80	IPR002100	GO:0003677\|GO:0046983
	Lal18g1540	247	PANTHER	MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN	17	239	-	-
	Lal18g1540	247	SUPERFAMILY	SRF-like	23	100	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g1540	Lal-Chr18	17161444	17168360	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g1540	1	247	MADS-box Gene Family	AT3G58780	66.929	2.30e-118	336

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lal18g1540		K-box	3.8e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g1540	K09264		-	gmx:100792224	389.423

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal18g1540	18	17161444	17168360	Lal18g1540	18	17161444	17168360	PCT