LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g1534	ATGGATAAACATTCTAGGGATTCTATGCCAGCTCATGGTTCTAAAGGTTCGTCTGAGATTTTCTCACTCAATGTTGCGAAAAAAGTTGCAAGCAGCGCACGGGGAATACCAAGCGGGGCTGATGCATTTCATGTTTCAAGTGATACGAGCTTGTTTTCTAGTTCACTTCCTGTTATTCCTCATGAAACGCTAAATTTTACTGATTTTGAGCACTATGGTCAATCTGCTGATGATAACTTGCCAATATTAGACAAAGTTCACAAAAAGGACATGGGACAAGATCCACTTGAAGACATTACAACCAATACAATGGAAAACATGCTTCCCGATGATGAAGATGAGCTGTTAGCTGGGATAATGGATGATTTTGACCTGAGTAGGTTACCCAACCAGCTGGAGGATCTGGATGAAAATGATCTTTTTGGTAGTGGAGGCGGGTTTGAGATGGATTTTGAACCTCAAGAGGGCCTTAGTATCGGTATTTCAAAGATAAGCTTATCTGATGGAGTCCCTTCAAATGGTTTTGGTCATTTTGCAATCCTAAATGGCACAGGAGCGGTGGTTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGAGGAACATCAACAGTAATGTGGAGGATTCTGAATTAAGATCAGTATTTGAGCAATATGGAGATATCAGAACATTGTACACCGCATGCAAGCATAGAGGCTTTGTGATGATTTCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCCTGAGACGAAGAAAGCTTGATATTCACTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGAGCTTATGGGGAGGTCAAAGAGATCAGGGAAACGCCTAATAAAAGGCACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCACTTAAAGCATTAAATCGAATTGACATTGCTGGGAAACGCATCAAACTTGAGCCCAGCCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAAATGACTGAGCTGGAGCAAGATGAAACTCGAACTTTTAGACATCAAGTGGGTTCACCTATTGCCAATTCTCCTCCTGGAAATTGGGCACTCTTTGGGAGTCCAGTTGAACATCCATTAGGTTCTTTTAGCAAATCTCCCGGTTTGAGTTATGGCAGCCCTATGAATACCAGCCATTTGCCTGGATTAGGAGCAATTCTTTCTCCACATGCGTCAACCTCTCCAAAGATTTCACCAATTGGTAAGGACCTTGGAAGGGCTAATAATGCAAATCAAATTTTTGCAAGCTCTGGATCTTCACAAGGAGCTGCTTTTCAGCCTTCTATGTCCTTTCCCGAGCATAGAGTAAATTCTAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAAGTCAAGTTCTTCAAGTGTGGGAACACTGTCTGGCCCTCAATTTCTGTGGGGAAGTCCAACTCCTTACTCGGAGCATTCAAACACACCTGCTTGGTCTTCAACTTCAGGGGGGCTTCCATTTTCTTCTAATGGACAAAGGCAGGGTTTCCATTATACTAGTCGGCACAATTCGTTTCTTGATTCTCACCCGCATCATCATGTGGGATCCGCTCCATCTGGCCTTCCATTTGATAGGCATTTTAGCTACTTTCCAGAGTCACTTGAAACTTCTGTCAAGAGTTCAGTTGCATATGGAAGTTTGAATGTTGCTGGCTTTCCAGGAAATAGGACTGAAATTAGTTCACCTAATTCAAGAATGATGTCACTGCCTAGGCATGGACCCTTGTTCCTTGGAAATGGTTTGTATTCTGGGCCGGGAGCAGCAAACACTGAGGGATTGACTGAACGTGGTCGAAATAAGCAACCTGACAATAGTGGGAACCAAATTGATAGCAAGAAGCAGTACCAGCTTGATCTAGACAAAATTATGAGGGGAGAAGACACAAGGACAACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAGTTTGCTGCTTGCTGCTATTGATGAGAATCACAAGGGTAGTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAACAAGTGCAACGTGGGCTATGCTTTCATCAACATGGTGTCTCCTTCTCACATCATCCCTTTCTACAAGGCATTTAATGGGCAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCACTGGCATATGCACGTATCCAGGGAAAGGGTGCCCTTGTGACACATTTTCAGAATTCAAGCCTAATGAACGAGGATAAGCGGTGCCGACCAATTCTCTTTCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCGTCTCAAGCAATTTGAATATATGCATTCGTCAGCCGGATGGTTCTTACTCAGATGATTTGTTGGAGAGGCAGATGAATGAAAAGGTTGAGAAGGATTGA	2508	0.4246	MDKHSRDSMPAHGSKGSSEIFSLNVAKKVASSARGIPSGADAFHVSSDTSLFSSSLPVIPHETLNFTDFEHYGQSADDNLPILDKVHKKDMGQDPLEDITTNTMENMLPDDEDELLAGIMDDFDLSRLPNQLEDLDENDLFGSGGGFEMDFEPQEGLSIGISKISLSDGVPSNGFGHFAILNGTGAVVGEHPYGEHPSRTLFVRNINSNVEDSELRSVFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPNKRHHKFIEFYDVRAAEAALKALNRIDIAGKRIKLEPSRPGGARRNLMQQMTELEQDETRTFRHQVGSPIANSPPGNWALFGSPVEHPLGSFSKSPGLSYGSPMNTSHLPGLGAILSPHASTSPKISPIGKDLGRANNANQIFASSGSSQGAAFQPSMSFPEHRVNSSPRPISTFGESKSSSSSVGTLSGPQFLWGSPTPYSEHSNTPAWSSTSGGLPFSSNGQRQGFHYTSRHNSFLDSHPHHHVGSAPSGLPFDRHFSYFPESLETSVKSSVAYGSLNVAGFPGNRTEISSPNSRMMSLPRHGPLFLGNGLYSGPGAANTEGLTERGRNKQPDNSGNQIDSKKQYQLDLDKIMRGEDTRTTLMIKNIPNKYTSSLLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGQKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFVSSNLNICIRQPDGSYSDDLLERQMNEKVEKD	835

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g1534	835	MobiDBLite	consensus disorder prediction	636	660	-	-
	Lal18g1534	835	MobiDBLite	consensus disorder prediction	464	545	-	-
	Lal18g1534	835	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	199	272	IPR000504	GO:0003723
	Lal18g1534	835	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	11	832	-	-
	Lal18g1534	835	CDD	RRM1_MEI2_like	198	274	IPR034453	-
	Lal18g1534	835	Gene3D	-	189	282	IPR012677	-
	Lal18g1534	835	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	284	357	IPR000504	GO:0003723
	Lal18g1534	835	CDD	RRM3_MEI2_like	681	766	IPR034454	-
	Lal18g1534	835	Gene3D	-	283	381	IPR012677	-
	Lal18g1534	835	SUPERFAMILY	RNA-binding domain, RBD	196	359	IPR035979	GO:0003676
	Lal18g1534	835	Pfam	RNA recognition motif 2	678	774	IPR007201	-
	Lal18g1534	835	SMART	rrm1_1	285	353	IPR000504	GO:0003723
	Lal18g1534	835	SMART	rrm1_1	200	268	IPR000504	GO:0003723
	Lal18g1534	835	SMART	rrm1_1	680	756	IPR000504	GO:0003723
	Lal18g1534	835	CDD	RRM2_MEI2_like	283	353	-	-
	Lal18g1534	835	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	286	351	IPR000504	GO:0003723
	Lal18g1534	835	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	201	265	IPR000504	GO:0003723
	Lal18g1534	835	PANTHER	PROTEIN MEI2-LIKE 2	11	832	-	-
	Lal18g1534	835	SUPERFAMILY	RNA-binding domain, RBD	680	764	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g1534	Lal-Chr18	17113765	17120006	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g1534	139	427	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.077	2.52e-08	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g1534	-		-	gmx:100812324	1314.29