Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1522 ATGGAAGAGGCCAAAGTAGATAGATCAGATGAAGTTGTTCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTAAGGAGAAAGGTGGAGAAGAAGTCTCTTCGAATTGAACTCATCAAACAGATTGACATATATAAATATGATCCATGGGATCTTCCAAAAGTGAGTAGTGTGGGGGAGAAGGAATGGTATTTCTTTTGCAAGAGAGGGAGAAAGTATAGGAACAGCATAAGGCCTAATAGGGTGACACAATCTGGATTCTGGAAAGCCACAGGAATTGACAAACCTATATATTCATCATCGACTGAAAGTGTAATAATTGGGCTGAAGAAATCATTGGTGTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCAACTAATCCAAATACTACCAATAATCCACAATCTAATGATCTTCAACAAGAAGCTGAAGTATGGACACTATGCAGAATATTCAAACGCATCCCATCTTACAAGAAGTACACACCATCTTTGAAAGACTCAAAACCAAACCAAAGTAATTCTTCAACTTCTAAAACATGCAGCAGTTTTGAATCTGACAACACCAACCCATATTTGACTTTCACAGACTCACTTCTCATTCAACAAAATGAAACTAAACCTGTTATTGGACATGTTGACCAAAGGAACCACTTTTTTCTAACTCACCCTCCAACAACCTTGTCTTACCCAAGTTTTTGGAACCAGAATGTTGATGATGTTTTTGAAAATGAGAATTGGGATGATCTCAGATCTGTGGTCCAGTTTGCTATGGATCCATCCAAGGATTATTATCATTGTAAATAA 861 0.381 MEEAKVDRSDEVVLPGFRFHPTDEELVGFYLRRKVEKKSLRIELIKQIDIYKYDPWDLPKVSSVGEKEWYFFCKRGRKYRNSIRPNRVTQSGFWKATGIDKPIYSSSTESVIIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPTNPNTTNNPQSNDLQQEAEVWTLCRIFKRIPSYKKYTPSLKDSKPNQSNSSTSKTCSSFESDNTNPYLTFTDSLLIQQNETKPVIGHVDQRNHFFLTHPPTTLSYPSFWNQNVDDVFENENWDDLRSVVQFAMDPSKDYYHCK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1522 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 286 - -
Lal18g1522 286 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Lal18g1522 286 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Lal18g1522 286 MobiDBLite consensus disorder prediction 181 204 - -
Lal18g1522 286 ProSiteProfiles NAC domain profile. 13 172 IPR003441 GO:0003677|GO:0006355
Lal18g1522 286 MobiDBLite consensus disorder prediction 182 204 - -
Lal18g1522 286 PANTHER - 8 286 - -
Lal18g1522 286 SUPERFAMILY NAC domain 12 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1522 Lal-Chr18 17039275 17041727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1522 2 172 NAC Transcription Factor Family AT5G39820 62.500 5.72e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal18g1522 NAM 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1522 - - gmx:100784323 399.823