Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1513 ATGACAACCAACATTCCTGGTTGGAATTTTGAGAGTGATACATTTGTCACCAATCAAAAGAGATCCATAGGGCTAGACCAAGAACTTGTAGAGCTACTATGGCAAAATGGGCAAGTAGTTTTCAACAGCCAAACACAAAGGAAACAAGTTGGAAATTCATCTGATATGAGACAGGTTCAGAAAAATGAGGGGTCAACTTTGAGGACTAGTGTACCTTATGGCAACTCAAGTAATTTGAGTCAAGAAGATGAGACAATTTCATGGCTCCAATACCCACTTGAGGATCCATTGGAACAACAATTTAGTTCAAACTTTTTACCTGAAATAGCACCTTATCATGTTGAGTCTTATAAGCCAATCAAGCCATTGGAAGAAGGAAATTTTGTCAAAATTGTTGCGCCTAGTGCTCCTCATGCAACTTCAAATTCACAATCACCTAATATGAAACCTTGTGTTCAGGAATTCCAAGCAAATCCTGTGCCTGTTCCTAGATTTCATGTTCCTGATTCAGCTAAACAAACCAATGACTTAGGTAGAACAAAAAAGGTCCCAAAATTTTCAGGCTTTTCAGCACCTCCTAATGTTTCTTCAGTATCTGCTAATGCACTGGTTGGAAAGAAAGTTAGTACACAAAATGAAGGCAAAGAGTGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATACCTCAGGAACCAGATGTAAGCATGGTATCAAGTAGTGGTTGGGCTACTACTTTATCTGCTGAAACTGAAGCTGCAAGAGATCATGTCCAGAGAACACTCCCTTGGAGCGAAAAGGGAAAATCGGAGATGGTTGAACCAAATTTGACTTCATCTTCTGGTGGCTCAGGCAGCAGCAGTCTTGGAAAAACATGTTCCCTGTCAACAGGAAATCTTGGCCAAAAGAGAAAAAGGACTGATGCAGAAGAATCAGAGGAACAAAGTGAGGACATAGAACTTAAATCAGGTATTGGCAGCAAGGCATCACAACACGCAGGGTCTTCCCGAAGGAACCGGGCAGCTGAAGTGCACAATCTATCAGAAAGGAGAAGAAGAGATAGAATCAATGAGAAGATGAGGGCATTGCAGCAACTAATACCAAACAGCAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGCTGGCATGTCACCAATGATGTTTCCAGGAATTCAGCATTATATGTCACAAATGAGTATGGGAATGGCTGCACCTTCTATTCAAAACCCAATGCAATTACCAAGAGTACCTCTTGATCAGTCCATGCCTCAAAATCCAGTTTTGGGTGCTTTTAATTACCAAAATCAGATGCAAAACTCATTCCTTGCAGAACAATATGCACGTTACATGGGCTGTCACCTTATGCAAAGTGCCACTCAGCCAATGAATGCATATAGATATGGTTCACAGGCACTACAACAAGGTCAAACAATGATTACACCCACCACTGGAGCAGCCAATATGGATGATCCTATCAGTGCCAAAATGGGTTCATCCACATTTAAATGA 1575 0.4127 MTTNIPGWNFESDTFVTNQKRSIGLDQELVELLWQNGQVVFNSQTQRKQVGNSSDMRQVQKNEGSTLRTSVPYGNSSNLSQEDETISWLQYPLEDPLEQQFSSNFLPEIAPYHVESYKPIKPLEEGNFVKIVAPSAPHATSNSQSPNMKPCVQEFQANPVPVPRFHVPDSAKQTNDLGRTKKVPKFSGFSAPPNVSSVSANALVGKKVSTQNEGKECSVMTVGSSHCGSNHIPQEPDVSMVSSSGWATTLSAETEAARDHVQRTLPWSEKGKSEMVEPNLTSSSGGSGSSSLGKTCSLSTGNLGQKRKRTDAEESEEQSEDIELKSGIGSKASQHAGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQLQLQVMWMGAGMSPMMFPGIQHYMSQMSMGMAAPSIQNPMQLPRVPLDQSMPQNPVLGAFNYQNQMQNSFLAEQYARYMGCHLMQSATQPMNAYRYGSQALQQGQTMITPTTGAANMDDPISAKMGSSTFK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1513 524 PANTHER TRANSCRIPTION FACTOR PIF5 4 507 - -
Lal18g1513 524 CDD bHLH_AtPIF_like 343 405 - -
Lal18g1513 524 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 406 IPR036638 GO:0046983
Lal18g1513 524 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 4 507 IPR031066 -
Lal18g1513 524 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Lal18g1513 524 MobiDBLite consensus disorder prediction 505 524 - -
Lal18g1513 524 MobiDBLite consensus disorder prediction 46 79 - -
Lal18g1513 524 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Lal18g1513 524 SMART finulus 349 398 IPR011598 GO:0046983
Lal18g1513 524 MobiDBLite consensus disorder prediction 341 356 - -
Lal18g1513 524 Gene3D - 338 399 IPR036638 GO:0046983
Lal18g1513 524 MobiDBLite consensus disorder prediction 275 305 - -
Lal18g1513 524 MobiDBLite consensus disorder prediction 253 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1513 Lal-Chr18 16985232 16989812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1513 8 98 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 38.614 1.66e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal18g1513 HLH 6.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1513 K16189 - gmx:100784531 657.136