Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1508 ATGGCTTTTTTTAGGAACTCTCAAAATGATACAGTCTCAGATAGTGTCATGGATGATGAAGTCCAAGGACAGAATGCTAATAGAGTGCATAGATTGGTCGGCAATGAATGTGCTGATGCAACTTATAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATCAGAGTGATGGTGAACCAGATGGTGCCAGTAGAGTGCAAAACAAGGCAACAACTGATGATGGAGTTGCTACAAGAGAATCAAACTTACGGACTGCTGGTAGTAAAACAGCTATGGCCGGAAGGTGGGGTTCAACGTTTTGGAAGGACTGCCAGCCTATCCGCCCACAGAGTGGTTCTGAATCTGGGCATGATTCCAAAAGTGGATCAGACTATAGACATGAAGATTGTTCTGAAGGTAATTCATTGGATGGAAGAGGGGAAAGATTAGACTCAGAAGATGATGATGAACAAAAGGAGGCAGGAAAAGGTCCAGTAGGCCATCCTGATGTTCCTGCTGAGGAGGTATTGTCTGATGAATATTATGAGCCGGATAGGGAAGAGCAACGTAGCTCATTTCCTCAGCGCATTCATATGCCCGATGGATCGAATTCGTGGCCTCCACGGGTGTCCACTACTCTCAATAGAAATTCAAATAGGAAATATAGGATTTCAGATGATGATGATAACGTCGATAATGATGGTGATGCTGATTATGAAGAGGAGGACGAAGCAGATGAAGATGATCCTGATGATGTAGACTTTGAACCTGCCACAAGTGTCCATGCAGCAAACAAGGATAAAGATTGGGAAGGTGAAGGTTCATATGAAGATGATGATAGTGATGAAAATATAGATGTCTCAGATGATGATGACTCTCGCTATGGTAAAAAACCTAAGGGAAGGCAAAGGGGTAAAGTTGTACAAAGCCTAAAATCTACCAGAGATCGCAAAACATATCCTTTATCTGGCCGACAAAAAAGAATTAAATCAACTTTTGAAGACGATGAGTCAATAGCAGAGGATTTTGACAGTGATAGTGATGAGGATTTCAAAAGCATAAAAAAGAGAGGTATTCATGTCCGCAAGAATAATGGCCGCTCTTCTGCATCCACAAGTTTTTCTATTCGCAACAATGAAGTTCGCACTTCTACTAGGACAGTTAGGAAGGTATCGTATGTTGAAAGTGATGAAAGTGAAGATGCCGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGACGACGATAGCGACTCCATTGAAAAGGTGCTTTGGCATCAGCCGAGGGGCATGGCTGAAGATGCGCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCTGAAGTTGACTGGAATGAGATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTTAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAGATAATGGAGGATATCAGGCACAGGAAGACTATCTCAAGAGAGGAGATTGAGGTCAATGATGTCAGCAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTCGAAAGAATTATCGCAGATAGGATCAGCAAGGTTAATTCTGGAACGGTTGTTCCAGAATACTTGGTCAAGTGGCAAGGGCTATCTTATGCTGAAGCAACTTGGGAAAAGGACATTGACATCACTTTTGCTCAACATGTCATTGATGAGTATAAGGATCGTGAGGCTGCAATGTCGCTGGCTCAAGGAAAGACGGTAGATTTCCAGCGTAAGAAGAGCAAAGGAAGTTTGCGTAAACTTGAGGAACAACCCGAATGGTTGAAAGGTGGGAAGCTCCGTGATTATCAACTCGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGGAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAGTCGGTATCAATGCTAGGTTTTCTGCAGAATGCCCAGCAAATCCATGGTCCTTTTCTGGTAGTTGTTCCATTGTCTACTTTATCCAACTGGGCCAAAGAATTCCGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAGTACGAGTTTTATGATGATAAAAAGGCTGGTAGACCTATAAAATTTAATGCACTATTGACTACATATGAAGTAATTTTGAAGGATAAGGCTGTACTCTCTAAGATCAAATGGAATTATCTTATGGTAGATGAGGCTCATAGACTTAAAAATAGCGAGGCACAGTTGTACACAACACTTTCAGAATTTAGCACCAAGAATAAGTTGCTTATAACCGGTACTCCTCTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATGCTGACAAGTTCAAGAGCAAGGATGATTTTGTTCAGAATTATAAGAATTTGAGTTCTTTCAATGAGAATGAGCTTGCGAATCTTCATATGGAATTGAGGCCTCACATCCTTCGAAGAGTTATCAAAGACGTAGAGAAATCATTACCCCCAAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTACAAATGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTCCGTGGTAACCAGGTTTCTCTTCTCAATATTGTGGTGGAATTGAAGAAGTGCTGCAACCATCCGTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGAACTCTGTTGATAACAGTAAGCTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTGGTCATACTTGATAAGCTACTTGTTAGATTGCATGAAACCAAGCATCGTGTTCTAATATTCTCTCAGATGGTTAGAATGCTGGATATACTGGCAGAGTATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTCCGACAGCAGGCGATGGAGCATTTCAATGCACCTGGAAGTGATGATTTTTGTTTCCTTCTTTCAACGCGAGCAGGGGGTCTGGGCATCAACCTTGCCACAGCAGACACTGTAATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCCCATAGAATTGGGCAACAGGAAGTTGTTAACATATATCGGTTTGTAACCAGCAAAAGTGTTGAGGAAGATATATTGGAACGTGCTAAGAAGAAAATGGTTCTCGACCACTTGGTGATTCAAAAACTTAATGCAGAGGGTAGACTGGAGAAGAAAGAGGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAATTGTCCGCAATCTTACGGTTTGGGGCTGAGGAGCTTTTCAAGGAAGAAAGGAATGATGAAGAAAGCAAGAAACAACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGCCAATTTCCGCAATGATGAAGATGATGGAAGTTTCTGGAGTCGGATGATAAAGGCAGATGATGTATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGGAATATTAAAAGCTATGCGGAAGCTGATGAGTTTGAAAGAAGTAACAAAAGAAAAAAGAAGGAACCTGAACCTCCTGAACGAGTTCAGAAACGCCGGAAAGCAGAGTATTCAGGTCCTGCAGTACCAATGATTGAGGGAGCATCCGCCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCAGATTTTCTCGTGCGTATTTGGCTGTAAATATCTTGTATGTTCATCTCCGATTAAATCACCAGGTTATGAAATATGGAAACAAGAGTCAGATCAACCTAATTGCTGCTGAGGTTGGTGGTGCTGTTGGAGCAGCTCCAACTGAAGCACAGACTGAGCTCTTCAATGCTCTAATTGATAGCTGTACTGAAGCAGTCGAACTTGGAAGTCTGGATCTGAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCGGTTAAGGCAAATGATCTACTTACCCGTGTTCAGGAACTTCAACTCCTGGCAAAGCGCATCAGTCGATATGAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTTAAACCTTCAAACTGGTCGAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGACTGCTTCTAGGAGTACATTACCACGGATTTAGTAATTGGGAGAAGATTAGATTAGATGACAGGCTTGGTCTAACGAAGAAGATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTGCCAAGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGAAAACCATGCCAATAGCAGAGTTGTCCGGAAGCCTTCCAAGAAAGAGAGAGAACATATGATGAACAACTCACTTTTCCGTGGGCAGGAGAAGAAAAAACCAGGTTCTGCTAAAGTTAATGTCCAACTGAGAAAGGATAGACTTCACAAACCCCAAAATGTTGAACCTATAGTAAAAGAGGAGGGTGAGATGTCTGATAATGACGAAGTATATGAGCAATTCAAGGAGGTAAAATGGATGGAGTGGTGTCAGGATGTGATGGTTGACGAAATGAAAACCTTGAAACGTCTTCACAGATTGCAGACAACAAGTGCCAATCTTCCTAAGGAAACGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTTGGTCGAAGGATAGACCAAATTGTGTTAGATCATGAAGTGGAACCCTACAAGCAAGACAGGATGACTGTGCGACTCTGGAAATATGTCTCCACTTTTTCCCATCTCTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCAGGGGTTGGCCCTTCTCATGTCAATGGTTCTGTATCCGTTCCATTTAGCAGAAATGGAAACCCATTTTCTCGCCATATGGAGAGGCAAAGAGGATTCCAGAATATGAGTAACTACCAAATGTCAGAACCAGTTAATAATACAGGGAAATCTGAGGCATGGAAACAGAGAAGAGCTGAAAGTGTTGATCAACTCCAGAGTCACCCGCTACCTCAAAGAACCATGAGTAATGGAATTCGGAATTCTGATCCTAGTGCGCAAGGCATTCTTGGCGCTGGACCATCTGACAAACGTTTTGTTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCTAAACAAGGCTTCTCTTCAGGATAA 5244 0.4161 MAFFRNSQNDTVSDSVMDDEVQGQNANRVHRLVGNECADATYSEKEFDMNMEAQYQSDGEPDGASRVQNKATTDDGVATRESNLRTAGSKTAMAGRWGSTFWKDCQPIRPQSGSESGHDSKSGSDYRHEDCSEGNSLDGRGERLDSEDDDEQKEAGKGPVGHPDVPAEEVLSDEYYEPDREEQRSSFPQRIHMPDGSNSWPPRVSTTLNRNSNRKYRISDDDDNVDNDGDADYEEEDEADEDDPDDVDFEPATSVHAANKDKDWEGEGSYEDDDSDENIDVSDDDDSRYGKKPKGRQRGKVVQSLKSTRDRKTYPLSGRQKRIKSTFEDDESIAEDFDSDSDEDFKSIKKRGIHVRKNNGRSSASTSFSIRNNEVRTSTRTVRKVSYVESDESEDADEGKKKKSQKEEIEDDDSDSIEKVLWHQPRGMAEDAQRNNRSTEPVLMSHLFDSEVDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRHRKTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKVNSGTVVPEYLVKWQGLSYAEATWEKDIDITFAQHVIDEYKDREAAMSLAQGKTVDFQRKKSKGSLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKAGRPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDADKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGNSVDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKQLLSMDIDEILERAEKVANFRNDEDDGSFWSRMIKADDVFQAEEALAPRSARNIKSYAEADEFERSNKRKKKEPEPPERVQKRRKAEYSGPAVPMIEGASAQVRNWSYGNLSKRDALRFSRAYLAVNILYVHLRLNHQVMKYGNKSQINLIAAEVGGAVGAAPTEAQTELFNALIDSCTEAVELGSLDLKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGVHYHGFSNWEKIRLDDRLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGENHANSRVVRKPSKKEREHMMNNSLFRGQEKKKPGSAKVNVQLRKDRLHKPQNVEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQTTSANLPKETVLSKIRNYLQLLGRRIDQIVLDHEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHVNGSVSVPFSRNGNPFSRHMERQRGFQNMSNYQMSEPVNNTGKSEAWKQRRAESVDQLQSHPLPQRTMSNGIRNSDPSAQGILGAGPSDKRFVSEKPYRTQPGGFPSKQGFSSG 1747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1508 1747 MobiDBLite consensus disorder prediction 120 158 - -
Lal18g1508 1747 Pfam SNF2-related domain 640 909 IPR000330 GO:0005524|GO:0140658
Lal18g1508 1747 ProSiteProfiles Chromo and chromo shadow domain profile. 415 503 IPR000953 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 1689 1710 - -
Lal18g1508 1747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 633 805 IPR014001 -
Lal18g1508 1747 Pfam Domain of unknown function (DUF4208) 1526 1618 IPR025260 -
Lal18g1508 1747 ProSiteProfiles Chromo and chromo shadow domain profile. 528 592 IPR000953 -
Lal18g1508 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 1125 IPR027417 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 199 213 - -
Lal18g1508 1747 SUPERFAMILY Chromo domain-like 507 583 IPR016197 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 358 384 - -
Lal18g1508 1747 Pfam Chromo (CHRromatin Organisation MOdifier) domain 529 583 IPR023780 -
Lal18g1508 1747 Pfam Helicase conserved C-terminal domain 936 1049 IPR001650 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 1664 1747 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 1664 1678 - -
Lal18g1508 1747 Gene3D - 530 582 - -
Lal18g1508 1747 Gene3D - 1343 1456 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 385 417 - -
Lal18g1508 1747 CDD CD2_tandem 526 582 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 61 89 - -
Lal18g1508 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 842 IPR027417 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 223 248 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 303 330 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 105 119 - -
Lal18g1508 1747 Gene3D - 401 527 - -
Lal18g1508 1747 CDD CD1_tandem 413 493 - -
Lal18g1508 1747 Gene3D - 852 1080 IPR027417 -
Lal18g1508 1747 SMART helicmild6 965 1049 IPR001650 -
Lal18g1508 1747 Coils Coil 1079 1099 - -
Lal18g1508 1747 CDD SF2_C_SNF 925 1060 - -
Lal18g1508 1747 SUPERFAMILY Chromo domain-like 411 495 IPR016197 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 1623 1651 - -
Lal18g1508 1747 SMART DUF4208_2 1514 1619 IPR025260 -
Lal18g1508 1747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 939 1090 IPR001650 -
Lal18g1508 1747 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1669 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 267 283 - -
Lal18g1508 1747 Gene3D - 612 851 IPR038718 -
Lal18g1508 1747 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1669 - -
Lal18g1508 1747 SMART ultradead3 617 816 IPR014001 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 1194 1224 - -
Lal18g1508 1747 SMART chromo_7 526 585 IPR000953 -
Lal18g1508 1747 SMART chromo_7 164 496 IPR000953 -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 1194 1219 - -
Lal18g1508 1747 MobiDBLite consensus disorder prediction 55 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1508 Lal-Chr18 16939257 16957359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1508 643 1076 RAD5 or RAD16-like Gene Family AT1G02670 26.139 2.87e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal18g1508 SNF2_N 2.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1508 K11367 - gmx:100808039 2849.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1508 18 16939257 16957359 Lal18g1508 18 16939257 16957359 ECH
Lal18g1508 18 16939257 16957359 Lal6g0122 6 755786 774308 LSH