Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal18g1506 | ATGTCACGCGGTGATAGAATGACATCGGATCTTAACAGAACTGGTACTGTTGAAAGAGACATTGAGCAGTGTGCTGATGTTAGCAATGTTGTCATATTTGTTGTTGTTGTTGTTGTCTTGAATGCCATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGAAAGCCCAAGTTTTGTCCCTTTCGGCTTTCCAATGATGAATCTATTTTGATATGGTTTTCAGAGAGAGAAGAGAAGCACCTTAAACTGAGCCATGTCTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCGCGACCTGAGAAGGAGTACCAGTCTTTTTCTCTTATCTACAATGATAGGTCACTGGACCTGATTTGCAAGGATAAAGACGAAGCCGAGGTTTGGTTCAGTGGTTTGAAAGCATTAGTTTCAGGTAGCCATCACCAAAAGTGGAGGACTGAATCAAGAAGTGATAGTGTTCCATCTGAAGCTAATAGTCCCCAAACATACACTAGAAAATGTTCACCTTTAAATTCTCCATTTGGTAGTAATGACAGCTTGCAAAAGGATAGCGAGGATCACCTTAGCCCATATGAGAGCCCCCCGAAGAATGGTTCGGACAAAGCATTCTCTGATGGGGTTTTGTATGCTGTTGCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGGCTCAGTCCAAACTCTGTCATCCGGAGGATCAGATAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCGAGTGCTTTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTTTGGGTGGTGGGATTCACCGAGTTGGGAGTTGTTTGGGAGTAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAACATTGCTTGTGGTGGACAACATGCAGCCTTAGTGACCAAACAAGGCGAAATTTTCTCATGGGGGGAGGAATCAAGAGGCAGGCTTGGGCATGGTGTTGAATCTGATATTCTCCACCCAAAGCTTATAGAATCTCTAAGTGATACAAGTATCGAACTTGTTGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTGATGCCACATATAATTATGGTCTTCTGGGGCATGGGAATCAAGTGAGCCACTGGGTCCCGAAAAGAGTAAATGGACCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGACCATGGCATACTGCTGTTGTAACCTCTTCTGGGCAATTATTTACTTTCGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGAACGAAAAAATGTATTGTTACCAAGGGAAGTAGAGTCCCTCAAAGGTTTCCGTACTGTACGGGCTGCTTGTGGGGTTTGGCATACTGCTGCAGTTGTTGAAGTCATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTTTTTACTTGGGGTGATGGAGACAAGGGTCGACTCGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCATCCCTCGTTGACCCCAGTTTTTGTCAAGTTGCTTGTGGACATAGTCTGACTGTTGCACTTACGACTTCAGGCCATGTCTATACAATAGGCAGTCCTGTTTATGGCCAGTTGGGAAATCCTCAAGCTGATGGGAAGTTACGAACCCGTATAGAGGGAAAGCTTTCGAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCCTATCATGTTGCCGTTTTAACATCAAGGAGTGAAGTTTACACTTGGGGGAAGGGTACCAATGGTCGTTTAGGCCATGGGGATACAAATGATAGAAATATCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATCTCACTGCAGCTATCTGTCTGCACCAGTGGGTGTCTGGTGTTGACCAGTCTCTGTGTTCTGGTTGTCGTCTTCCATTTACTTTCAAAAGAAAACGCCACAATTGTTACAATTGCGGACTTGTGTATTGCCACTCATGTAGCAGTAAAAAGTGTGTTAAGGCTTCAATGGCACCGAACCCCAACAAACCCTATCGTGTCTGTGATAATTGTTTTAATAAACTAAGGAAATCTTTAGAAACTGAACCTTCTCGTTCTTCTGTGAGTAGAAGAGGAAGTATCAGTCAGGGGTCACTTGAGTTAATTGATAAGAAGGATGATAAATTGGATTCCAGATATCGTAATCAACCTGCAAGATTTTATTCAATGGAATCCTTTAAACAAGTGGAAAGCAAGTCTTCAAAGAAAAACAAAAAAATGGAATTCAACAGTAGCCGTGTCTCACCTGTTCCAAATGGGGCTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAGTTCTTCTCAGCTTCAGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCTATATCTAGACGGCCTAGTCCACCTCGTTCAACTACTCCAATTCCAACTCTAGGAGGTCTTACTACACCGAAGATAGTTGTGGATGATGTGAAGAAGATGAGTTATAGCCTTAGTCAGGAGGTTATTAAATTAAAATCACAGGTGGAAAGCCTGACTCGTAAAGCCCAACATCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCCATAGCAGTTGCCGGGGAGGAAACATCCAAATGTAATGCAGCCAAAGAAGTGATCAAGTCACTTACTGCTCAGTTGAAGGACGTGGCTGAGAGGATACCTGTAGGAGCAGCTAGGAATGTCAAATCACCTTCATTTGGTTCTGAAGTTAGCTATGCTTCCATTGATCAGTTGAGTATTCAAGCAACAAACCCAGAAGTGGACTTAACTGGATTGAATAACCAGTTACTTTCTAATGGATCAAGTACGATCAGTAACCGTAGTGCTGGTCACAATAAACAGAGCCAGTCACATGCAACTAATAGAAATGGGAGCAGAACGAAGGATGGTGATTCCCATTATGAGACAGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGAACTTAAGAGAGTTCGTTTCAGTCGGAAGCGGTTCAGTGAAAAGCAAGCTGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGATCAATATAATGTGCGTATGATTGATAAGTCCACTGTTGGTGTTGGGAGTGAAGACCTGGTTCATTGA | 3348 | 0.4289 | MSRGDRMTSDLNRTGTVERDIEQCADVSNVVIFVVVVVVLNAITALKKGAYLLKYGRRGKPKFCPFRLSNDESILIWFSEREEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALVSGSHHQKWRTESRSDSVPSEANSPQTYTRKCSPLNSPFGSNDSLQKDSEDHLSPYESPPKNGSDKAFSDGVLYAVAPKGFFPPDSASGSVQTLSSGGSDSMHGHMKTMGMDAFRVSLSSAFSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGIHRVGSCLGVKMDSLFPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESRGRLGHGVESDILHPKLIESLSDTSIELVACGEYHTCAVTLSGDLYTWGDATYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGERKNVLLPREVESLKGFRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVASLVDPSFCQVACGHSLTVALTTSGHVYTIGSPVYGQLGNPQADGKLRTRIEGKLSKSFVEEIACGAYHVAVLTSRSEVYTWGKGTNGRLGHGDTNDRNIPTLVEALKDKQVKSIACGTNLTAAICLHQWVSGVDQSLCSGCRLPFTFKRKRHNCYNCGLVYCHSCSSKKCVKASMAPNPNKPYRVCDNCFNKLRKSLETEPSRSSVSRRGSISQGSLELIDKKDDKLDSRYRNQPARFYSMESFKQVESKSSKKNKKMEFNSSRVSPVPNGASQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPIPTLGGLTTPKIVVDDVKKMSYSLSQEVIKLKSQVESLTRKAQHQEIELERTTKQLKDAIAVAGEETSKCNAAKEVIKSLTAQLKDVAERIPVGAARNVKSPSFGSEVSYASIDQLSIQATNPEVDLTGLNNQLLSNGSSTISNRSAGHNKQSQSHATNRNGSRTKDGDSHYETEWVEQDEPGVYITLTSLPGGVIELKRVRFSRKRFSEKQAEQWWAENRARVYDQYNVRMIDKSTVGVGSEDLVH | 1115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 328 | 341 | IPR000408 | - | |
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 347 | 363 | IPR000408 | - | |
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 397 | 413 | IPR000408 | - | |
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 438 | 454 | IPR000408 | - | |
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 454 | 468 | IPR000408 | - | |
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 557 | 575 | IPR000408 | - | |
| Lal18g1506 | 1115 | PRINTS | Chromosome condensation regulator RCC1 signature | 615 | 636 | IPR000408 | - | |
| Lal18g1506 | 1115 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 451 | 500 | IPR000408 | - | |
| Lal18g1506 | 1115 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 396 | 448 | IPR000408 | - | |
| Lal18g1506 | 1115 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 345 | 393 | IPR000408 | - | |
| Lal18g1506 | 1115 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 515 | 564 | IPR000408 | - | |
| Lal18g1506 | 1115 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 621 | 668 | IPR000408 | - | |
| Lal18g1506 | 1115 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 567 | 616 | IPR000408 | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 850 | 873 | - | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | BRX domain profile. | 1042 | 1097 | IPR013591 | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 397 | 451 | IPR000408 | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 231 | 250 | - | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 231 | 247 | - | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 345 | 396 | IPR000408 | - | |
| Lal18g1506 | 1115 | PANTHER | INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 | 40 | 1101 | - | - | |
| Lal18g1506 | 1115 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 684 | 744 | IPR013083 | - | |
| Lal18g1506 | 1115 | CDD | PH_PLC_plant-like | 42 | 147 | - | - | |
| Lal18g1506 | 1115 | Pfam | Pleckstrin homology domain | 43 | 146 | IPR001849 | - | |
| Lal18g1506 | 1115 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 331 | 341 | IPR000408 | - | |
| Lal18g1506 | 1115 | Coils | Coil | 938 | 958 | - | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 150 | 209 | - | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 676 | 738 | IPR017455 | - | |
| Lal18g1506 | 1115 | CDD | FYVE_like_SF | 682 | 734 | - | - | |
| Lal18g1506 | 1115 | Pfam | FYVE zinc finger | 672 | 738 | IPR000306 | GO:0046872 | |
| Lal18g1506 | 1115 | SUPERFAMILY | FYVE/PHD zinc finger | 672 | 743 | IPR011011 | - | |
| Lal18g1506 | 1115 | SUPERFAMILY | RCC1/BLIP-II | 282 | 673 | IPR009091 | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 568 | 619 | IPR000408 | - | |
| Lal18g1506 | 1115 | SMART | fyve_4 | 671 | 739 | IPR000306 | GO:0046872 | |
| Lal18g1506 | 1115 | Pfam | Unstructured region between BRX_N and BRX domain | 974 | 1035 | - | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 516 | 567 | IPR000408 | - | |
| Lal18g1506 | 1115 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 438 | 448 | IPR000408 | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 620 | 671 | IPR000408 | - | |
| Lal18g1506 | 1115 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 40 | 1101 | - | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 452 | 503 | IPR000408 | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 1006 | 1029 | - | - | |
| Lal18g1506 | 1115 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1041 | 1096 | IPR013591 | - | |
| Lal18g1506 | 1115 | Gene3D | - | 239 | 502 | IPR009091 | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 1006 | 1038 | - | - | |
| Lal18g1506 | 1115 | MobiDBLite | consensus disorder prediction | 161 | 189 | - | - | |
| Lal18g1506 | 1115 | Coils | Coil | 896 | 923 | - | - | |
| Lal18g1506 | 1115 | Pfam | Transcription factor BRX N-terminal domain | 933 | 966 | IPR027988 | - | |
| Lal18g1506 | 1115 | SUPERFAMILY | PH domain-like | 39 | 146 | - | - | |
| Lal18g1506 | 1115 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 283 | 344 | IPR000408 | - | |
| Lal18g1506 | 1115 | Gene3D | - | 38 | 155 | IPR011993 | - | |
| Lal18g1506 | 1115 | Gene3D | - | 505 | 683 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal18g1506 | Lal-Chr18 | 16918791 | 16926885 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal18g1506 | 942 | 1106 | Major Intrinsic Protein MIP | AT1G31880 | 31.183 | 1.57e-15 | 77.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal18g1506 | - | - | gmx:100806439 | 1821.59 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal18g1506 | 18 | 16918791 | 16926885 | Lal18g1506 | 18 | 16918791 | 16926885 | ECH | |
| Lal18g1506 | 18 | 16918791 | 16926885 | Lal22g0124 | 22 | 761042 | 770482 | LSH |