Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1505 ATGGAAGCATCAAATGAATTACAATCAGAAGAAAATAAATCTATGGATAAAAATAGGAAAAGAAAGCTCAAAACACCGGCCCAGGTTGCAGGACTGGAGAACTTTTACAATGAGCACAAATATCCCACAGAAGAAATGAAATCAGAACTTGCTGAGGACTTAGGGTTGACAGAAAAACAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGATGAAAGATGAAGCAGTTGCTAATGGGCGACAAGATCGTTCGAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCCAAAGAGGTTGAGAGCCAAGGTCTACACAATAATGGTTTTTCAGCTGCGGATATAGCCTACGGAAATAGGAACCACCATACAGAAAACATCAGTGGAATGGAGGACACTTCATCTGAGAGTAGCTCATATTTGCAAGACAGGTTGTTTCTTCAAGGCCAGGATCCATATGATATGGAGTCTTCTAGATATCTAACACCTAACAGAGCTCTTCCACCCCTAAATCCCAAGAGTGCAATTAACATGAGACATAAACCATCAGGGTATCTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCCGTTAAGAAGCAATTTGGAAGGAATTATCGAGAAGATGGTCCTCTACTTGGTGTAGAATTTGACCCACTTCCTCCAGGGGCATTTGAAGGCAAAAATGCAGGTCCAGTTCATGAATCATATGGTGTTGCAAATCCTGTTCTTCCAAATTCTCCAGATATCTCCCCTGTAAAAAGGCAACCCAGTCTTAGCTCTAGATATGATACGTATTATACTAAATTTAGTTCCCAAGATTCTCATATTGAAGGAGTTGACTTTGGCTCCTTGCATGACGGTTCTGGTTTCCAGGATAAACAAGATAAGAAAGCTCGGCAGAGTATGAAACAAAGGCAAACTTTTTACGGTAACAATCACTTTCCTGGCAGGAACTCTTCCCTGGATCTGTATGAAGACGACAATGGAGAAGCATCTGCTTATAATAGCACTAAGAATCATAGAATATGCATTACGCGTGGTGTGGAGGGAATGAGATCTGATTCTACTTCAAACCAGAGCGATCACTATGAAGAGAACCCCATGATTAAACAAACAGACTTGCTGCCACATGGCTATGATAACTTCAATCTGAAGAATGTGCAAAGGAGTGGACATGTAAAATCTAAGCATTCAAATTCAGTCCGTAATTCTCATATTCCTGTCGATACTGAAGAAAGAGGGCTATCTACTAGGATGGCAAAGGAAGAGATTTTTAACGGGGGCAAGAAGGCAAAGAAAATACATCGTGATGCAGATGGAGCAAGGATGCTTTCAAAAGAAATCACAGACGCAAAGCGAACTAAAGTCGATCCACTTCATCAATACCATGTGAAACAAGCACCCATTGCTGAGATTGACCAAAGGAAAATTCAAAGATCTGGTGCTCCGATACCATCGAGCTTTAGCGAGGACGAAACCGCTGATACCAGTTCCTCACTGGGTTAA 1578 0.4132 MEASNELQSEENKSMDKNRKRKLKTPAQVAGLENFYNEHKYPTEEMKSELAEDLGLTEKQVSGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESQGLHNNGFSAADIAYGNRNHHTENISGMEDTSSESSSYLQDRLFLQGQDPYDMESSRYLTPNRALPPLNPKSAINMRHKPSGYLKVKGEIENAAITAVKKQFGRNYREDGPLLGVEFDPLPPGAFEGKNAGPVHESYGVANPVLPNSPDISPVKRQPSLSSRYDTYYTKFSSQDSHIEGVDFGSLHDGSGFQDKQDKKARQSMKQRQTFYGNNHFPGRNSSLDLYEDDNGEASAYNSTKNHRICITRGVEGMRSDSTSNQSDHYEENPMIKQTDLLPHGYDNFNLKNVQRSGHVKSKHSNSVRNSHIPVDTEERGLSTRMAKEEIFNGGKKAKKIHRDADGARMLSKEITDAKRTKVDPLHQYHVKQAPIAEIDQRKIQRSGAPIPSSFSEDETADTSSSLG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1505 525 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Lal18g1505 525 MobiDBLite consensus disorder prediction 87 105 - -
Lal18g1505 525 MobiDBLite consensus disorder prediction 327 342 - -
Lal18g1505 525 MobiDBLite consensus disorder prediction 79 109 - -
Lal18g1505 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Lal18g1505 525 CDD homeodomain 19 74 IPR001356 GO:0003677
Lal18g1505 525 MobiDBLite consensus disorder prediction 497 525 - -
Lal18g1505 525 MobiDBLite consensus disorder prediction 1 23 - -
Lal18g1505 525 MobiDBLite consensus disorder prediction 309 349 - -
Lal18g1505 525 SMART HOX_1 17 79 IPR001356 GO:0003677
Lal18g1505 525 MobiDBLite consensus disorder prediction 504 525 - -
Lal18g1505 525 MobiDBLite consensus disorder prediction 1 36 - -
Lal18g1505 525 Gene3D - 8 91 - -
Lal18g1505 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Lal18g1505 525 MobiDBLite consensus disorder prediction 260 281 - -
Lal18g1505 525 Pfam Homeodomain 19 74 IPR001356 GO:0003677
Lal18g1505 525 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1505 Lal-Chr18 16909193 16914108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1505 14 524 Homeobox Transcription Factor Family AT4G03250 41.541 4.92e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal18g1505 Homeodomain 7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1505 - - gmx:100803515 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1505 18 16909193 16914108 Lal18g1505 18 16909193 16914108 ECH
Lal18g1505 18 16909193 16914108 Lal22g0125 22 772385 778007 LSH
Lal18g1505 18 16909193 16914108 Lal6g0129 6 858452 863245 LSH