Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1503 ATGAGTGGCGTCATAGATATTAATAAAACAATAACAGTTGTGGCTACTACAAGGAGGTTAGCTTCAGATTCTGGCGGTGGTGGTGCTTTCGCAGACTGGGCAACTACATCCTCCGCCGCTAACCGCTCTGTCGCCGCCCCGCCAGACGACTTATCCCTCGGTTTCAATGCTACCGGTCCCACAACCGGAGGAATATACTCCGGTGCCACCATTAGGCCAATCAATTACAACCTGGCACCGACAGAAATGGGTATGGTTGGACTCCGTGACCTCTTTGTCGTAGCACCTGCTTCTACCTTCCACCACCACCATGAGCAACCACACTACTCCGACCACCACCCTCCTCATCATTCCATTAATAGTAGTTCCAACCCCGCCACTGCACTCGGCGTTGGAATCGTCCCGCTCCTCACTGCAACACCTTGTCTCGACACTGAAACTATGATGAGTAATAGAAACCGTGGTAGCAGCGGGGGAATTCAGGGAATTCAGTTTTGGCAAGATCAGCAACCTCACCATTACTTGAAAAACCACAGCGTGAATGTTTGTCATGAAAATTATGTCCAGAGCGGTGGCAGCGGCGATGGTGACGGAATAACAGTTTCAGGTACAAATAGTGGTGGAACAACTACGTGTCAAGATTGTGGCAATCAGGCGAAGAAAGATTGTTGTAACAGAAGGTGTAGGACTTGTTGTAAGAGTAGAGGTTTTGATTGCCCTACTCACGTGAGGAGCACGTGGGTTCCCGCTGCACGCCGGAGAGAACGACAACTTATGCAATCCGTTACTGGTGGTGGTGGTTGTTCTACTGCTTCAACTTCTGGTGCTAAGAAACCTAAGCTTATTTCTTCACACACTACAACCAATTCCCGTACTTCCACTTCTAACACCACTCCTCCTAGGAGTTTTGACACTAGTTCTAGTCATCAAGATGGTGGTATCAAAGAGCCGTTGCCTGGTCAAATACGTGCACCTGCAGTTTTCAAATGTGTTAAGGTAACGGCAGTGGAAGATGGAGAAGATGAGTACGCTTATCAAGCTGTAGTTAAGATTGGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCAGGGGGTTGAAAATAGGGATCTTTTTCCCAATCTCTCGGAATTGCATTTGGGTGGTGGTAGTGGTGGGAATGGTAACGGTGGTGGTGGTTCAGGAAGAAATGGGGTTTCAACTTCATCCCCATTGATGGATCCTTCTGATATTTATGGTGGAGGGTTACTTGGAGGTTCAACATATGGTAATTCAATAAATTGA 1281 0.4754 MSGVIDINKTITVVATTRRLASDSGGGGAFADWATTSSAANRSVAAPPDDLSLGFNATGPTTGGIYSGATIRPINYNLAPTEMGMVGLRDLFVVAPASTFHHHHEQPHYSDHHPPHHSINSSSNPATALGVGIVPLLTATPCLDTETMMSNRNRGSSGGIQGIQFWQDQQPHHYLKNHSVNVCHENYVQSGGSGDGDGITVSGTNSGGTTTCQDCGNQAKKDCCNRRCRTCCKSRGFDCPTHVRSTWVPAARRRERQLMQSVTGGGGCSTASTSGAKKPKLISSHTTTNSRTSTSNTTPPRSFDTSSSHQDGGIKEPLPGQIRAPAVFKCVKVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVENRDLFPNLSELHLGGGSGGNGNGGGGSGRNGVSTSSPLMDPSDIYGGGLLGGSTYGNSIN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1503 426 MobiDBLite consensus disorder prediction 381 404 - -
Lal18g1503 426 MobiDBLite consensus disorder prediction 261 319 - -
Lal18g1503 426 MobiDBLite consensus disorder prediction 262 312 - -
Lal18g1503 426 MobiDBLite consensus disorder prediction 389 404 - -
Lal18g1503 426 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 83 426 - -
Lal18g1503 426 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 211 253 IPR006510 -
Lal18g1503 426 Pfam Domain of unknown function (DUF702) 209 366 - -
Lal18g1503 426 MobiDBLite consensus disorder prediction 103 124 - -
Lal18g1503 426 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 318 365 IPR006511 -
Lal18g1503 426 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 83 426 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1503 Lal-Chr18 16881912 16886343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1503 14 410 C2H2 Transcription Factor Family AT5G12330 47.981 2.21e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lal18g1503 DUF702 2.7e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1503 - - lang:109357487 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1503 18 16881912 16886343 Lal18g1503 18 16881912 16886343 ECH
Lal18g1503 18 16881912 16886343 Lal22g0127 22 810342 815063 LSH