Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1496 ATGGGCAATTGTTGCTCAGGTGGTGCCGATGACCCGGCTGAGAATGATGACAAGGGAGAAACCAATAACCAAGAAAGCAACAGCAGCAACAACAACAACAATGAAGGCTCAGCCACCAACCCATCGCCGCCACCATCTTCTACGAAGCCATCGAAACAAGCCCCTATTGGCCCTGTCCTTGGAAGGCCAATGGAGGATGTGAAAGCTATCTACAGCATAGGGAAAGAGCTAGGGAGAGGACAATTTGGTGTTACACATTTGTGTACACATAAGGCGACAGGAAAACAATATGCATGCAAAACCATTGCTAAGAGGAAACTAGTGAACAAGGAGGACTTAGAAGATGTAAGGAGAGAGGTACAAATCATGCATCACCTTACAGGGCAACCCAATATTGTAGAACTTGTTGGTGCCTTCGAGGACAAGCAGTCTGTGAATTTGGTGATGGAGTTGTGTGCTGGTGGTGAGCTTTTCGATCGAATGATTGCCAAGGGACATTACACCGAACGTGGTGCTGCTTCATTGTTGAGAACCATTGTCCAAATTGTACATACTTGTCATTCCATGGGTGTCATTCATAGGGACCTTAAGCCTGAGAATTTCCTCTTGTTGAGTAAGGATGAGAATTCACCCCTCAAGGCAACAGATTTTGGTCTATCAGTTTTTTACGAGCAAGGAGAGGTGTTTAAAGACCTTGTTGGCAGTGCATATTACATTGCACCTGAGGTTTTGAAGAGAAAATATGGACCTGAAGTTGACATTTGGAGTGTTGGTGTCATACTATACATTCTTCTATGTGGTGTTCCTCCATTCTGGGCAGAATCTGAAACTGGGATATTCAATTCTATCCTAAGAGGTCACATTGACTTCACCAGCGACCCATGGCCCTCCATTTCACCTCAGGCAAAAGATCTTGTTAGGAAAATGTTGAATATGGATCCTAAGCAGAGGTTGACAGCATACCAAGTTCTGAATGATTCTAATGAAGCACTTCTTGGGTTAAAAACAGATCATCCATGGATAAAGGAAGACGGAGAAGCACCAGATACACCTCTTGACAATGCAGTGCTGAATAGGCTCAAACAATTCAGGGCAATGGACCAATTCAAGAAAGTAGCTCTCAAGTTGCTCTATTTGGTAATTGCTGGGTGCTTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTCAAGGGAATGGATACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAACAAGGACTTGCAAAACAAGGGACTAAGTTGACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGACTCATAGATTATGATGAGTTCATCACAGCCACAATGCACATGAACCGAATGAACAGAGCAGACCATGTTTATACCGCATTCCAATACTTTGATAAGGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAATATGACATGCATGATGGCAGGGACATCAAGGAAATCATTGCAGAAGTTGATGCAGATAATGATGGGCGAATTAACTATGACGAGTTTGTAGCAATGATGACTAAGGGACACGCAGAAGCAGTACCTACCAAGAAAAGGCGCGATTCATTCGTTTCATAG 1632 0.4338 MGNCCSGGADDPAENDDKGETNNQESNSSNNNNNEGSATNPSPPPSSTKPSKQAPIGPVLGRPMEDVKAIYSIGKELGRGQFGVTHLCTHKATGKQYACKTIAKRKLVNKEDLEDVRREVQIMHHLTGQPNIVELVGAFEDKQSVNLVMELCAGGELFDRMIAKGHYTERGAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLSKDENSPLKATDFGLSVFYEQGEVFKDLVGSAYYIAPEVLKRKYGPEVDIWSVGVILYILLCGVPPFWAESETGIFNSILRGHIDFTSDPWPSISPQAKDLVRKMLNMDPKQRLTAYQVLNDSNEALLGLKTDHPWIKEDGEAPDTPLDNAVLNRLKQFRAMDQFKKVALKLLYLVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGLIDYDEFITATMHMNRMNRADHVYTAFQYFDKDNSGYITIEELEQALHEYDMHDGRDIKEIIAEVDADNDGRINYDEFVAMMTKGHAEAVPTKKRRDSFVS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1496 543 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Lal18g1496 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lal18g1496 543 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Lal18g1496 543 ProSiteProfiles Protein kinase domain profile. 71 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1496 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 533 - -
Lal18g1496 543 MobiDBLite consensus disorder prediction 22 42 - -
Lal18g1496 543 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 21 533 - -
Lal18g1496 543 Pfam Protein kinase domain 71 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1496 543 Gene3D - 332 527 - -
Lal18g1496 543 Gene3D Transferase(Phosphotransferase) domain 1 157 331 - -
Lal18g1496 543 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Lal18g1496 543 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Lal18g1496 543 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Lal18g1496 543 MobiDBLite consensus disorder prediction 1 61 - -
Lal18g1496 543 SMART efh_1 428 456 IPR002048 GO:0005509
Lal18g1496 543 SMART efh_1 464 492 IPR002048 GO:0005509
Lal18g1496 543 SMART efh_1 499 527 IPR002048 GO:0005509
Lal18g1496 543 SMART efh_1 392 420 IPR002048 GO:0005509
Lal18g1496 543 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Lal18g1496 543 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1496 543 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Lal18g1496 543 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Lal18g1496 543 SUPERFAMILY Protein kinase-like (PK-like) 71 325 IPR011009 -
Lal18g1496 543 ProSiteProfiles EF-hand calcium-binding domain profile. 499 530 IPR002048 GO:0005509
Lal18g1496 543 CDD STKc_CAMK 71 340 - -
Lal18g1496 543 SUPERFAMILY EF-hand 385 525 IPR011992 -
Lal18g1496 543 Pfam EF-hand domain pair 464 524 IPR002048 GO:0005509
Lal18g1496 543 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Lal18g1496 543 ProSitePatterns Protein kinases ATP-binding region signature. 77 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1496 Lal-Chr18 16837439 16839885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1496 1 541 EF-hand Containing Proteins AT5G12180 77.757 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal18g1496 Pkinase 2.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1496 K13412 - gmx:100820422 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1496 18 16837439 16839885 Lal18g1496 18 16837439 16839885 ECH
Lal18g1496 18 16837439 16839885 Lal22g0136 22 874939 877911 LSH
Lal18g1496 18 16837439 16839885 Lal6g0141 6 1029324 1034112 LSH