Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1480 ATGTCAAGTGGAGCAACTTACTGGTGTTACGCGTGCAGGCAGCCAATTGTGCTTGAAGGGAGATATGCCATCTGCCCTGACTGTGATGGAGGATTCGTACAAGAACTCGATGAGATGCAACAAACTCCACTCCAATTTACTGTTCTGTCGCAATCAGGAGAGTCTAATCAATCACCCGACCTTTTTGATGCTATACATGCTTTTATGGGGCGGAGAGGTTCTGATCCTAGATTTGGGCTTATGGATGTTGTTGATAATGTCGTGAGACGGAGAATGTCTGGAAGACACCCAAACTTTGATGTTAGAGGGAGGACTGGTTCTGTCCTAGCTCCTCCTGAACAGAATTGGGGTGTTTCTAGTTCTGGTCCTTATTTGATAGTTCATGGTCAATCTCCTGGGTTCGCCTTGTCTAACGGTGGCCCAAGAGGTGGTCCCAGGCGTGTTGATTTTGGTGACTATTTTGTGGGCCCTGGACTGGAAGAATTTATCGAACAACTCACCCTGAATGATCGGCATGGTCCTCCCCCAGCTGCACGTTCTTCAATTGATGCAATGCCTACTATTAGGATCACGCAGGCACATCTTCGCTCAGATTCACACTGTCCAGTTTGTCAAGACAAATTTGAGCTCGGCTGTGAAGCCAGAGAGATGCCATGTAACCATATTTACCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGCCCTGTTTGCCGTATTGAGCTGCCACCTCAAGGACATGTTTGTGCTCGTAGTAGTCGAAGCTTGGGAGGAAGGAATGCCAACAGAAACAGTGGCAGTGATAGTAGCTCCAGGCGCAGGGAGAGTACCAATCAGAACCGAGGAAGGAGAAACCCATTATCATTTTTGTGGCCATTCCGTTCTTCGACTCCAAACAATAATAATAATTATACTGAAACTAGGGGAAACGGCTCTTCTTCAACCACTCCTGACCAGCATGATGGAATTAGTTATAGTGGATGGCCCTTTGATTACTAA 1008 0.4673 MSSGATYWCYACRQPIVLEGRYAICPDCDGGFVQELDEMQQTPLQFTVLSQSGESNQSPDLFDAIHAFMGRRGSDPRFGLMDVVDNVVRRRMSGRHPNFDVRGRTGSVLAPPEQNWGVSSSGPYLIVHGQSPGFALSNGGPRGGPRRVDFGDYFVGPGLEEFIEQLTLNDRHGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCQDKFELGCEAREMPCNHIYHSDCIVPWLVQHNSCPVCRIELPPQGHVCARSSRSLGGRNANRNSGSDSSSRRRESTNQNRGRRNPLSFLWPFRSSTPNNNNNYTETRGNGSSSTTPDQHDGISYSGWPFDY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1480 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 318 - -
Lal18g1480 335 MobiDBLite consensus disorder prediction 284 325 - -
Lal18g1480 335 PANTHER OS03G0351800 PROTEIN 1 318 - -
Lal18g1480 335 CDD RING-H2_RNF126_like 201 242 - -
Lal18g1480 335 SMART ring_2 201 241 IPR001841 -
Lal18g1480 335 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Lal18g1480 335 SUPERFAMILY RING/U-box 181 248 - -
Lal18g1480 335 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Lal18g1480 335 Pfam Ring finger domain 200 242 IPR001841 -
Lal18g1480 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Lal18g1480 335 MobiDBLite consensus disorder prediction 254 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1480 Lal-Chr18 16731185 16732192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1480 145 246 C3H Transcription Factor Family AT5G01980 42.308 1.27e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1480 K11982 - gmx:100813674 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1480 18 16731185 16732192 Lal22g0146 22 918403 919401 LSH
Lal18g1480 18 16731185 16732192 Lal6g0157 6 1126031 1127589 LSH