Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1479 ATGGCTGTTACCTTCTCAGATCTACACACTGAGTCCGGTCTCAAATCCCTCGATGAATTCCTCTCTGGAAAAACCTATATTTCTGGGGATCAATTGACAAAGGATGACATAAAAGTGTATGCTTCTGTTTTGGAGAAACCATCAGATTCTTTCACACATGTTGCTAGGTGGTACGATGTTGTCTCTTCCCATCTTGCTATAAGGTTCCCTGGTACTGCTCAAGGGGTGAAATTCAGTGTCAAATCTGCACCAGCTGAAGTTGCTGCACCTGCTAAAGTGGATGCTCCCGCAGCAGATGACGATGATGATCTAGATCTCTTTGGTGACGAAACAGAGGAAGAGAAGAAGGCAACAGAGGAAAGGGAGGCTGCTAAGAAGCCTGCCAAAAAGAAAGAAAGTGGTAAGTCTTCTGTTCTGCTTGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTAGAAGAGACTGTCCGCAGCATCGAGTTGCCTGGTCTATTGTGGGGAGCATCTAAACTGGTTGCTGTTGGATATGGGATAAAGAAGCTGCAGATAATGATGACAATTGTTGATGACCTTGTATCTGTCGACACTCTCATTGAGGAACGTCTCACAGTTGAGCCATGCAACGAGTTCATCCAGAGCTGTGACATCGTCGCGTTCAACAAAATCTAA 675 0.4504 MAVTFSDLHTESGLKSLDEFLSGKTYISGDQLTKDDIKVYASVLEKPSDSFTHVARWYDVVSSHLAIRFPGTAQGVKFSVKSAPAEVAAPAKVDAPAADDDDDLDLFGDETEEEKKATEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIELPGLLWGASKLVAVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPCNEFIQSCDIVAFNKI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1479 224 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 224 - -
Lal18g1479 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 - -
Lal18g1479 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Lal18g1479 224 Gene3D - 3 76 - -
Lal18g1479 224 Gene3D - 128 224 IPR014717 -
Lal18g1479 224 SUPERFAMILY GST C-terminal domain-like 10 67 IPR036282 -
Lal18g1479 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lal18g1479 224 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Lal18g1479 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Lal18g1479 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lal18g1479 224 MobiDBLite consensus disorder prediction 111 132 - -
Lal18g1479 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1479 Lal-Chr18 16726822 16728951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1479 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 70.742 4.59e-101 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1479 K03232 - gmx:100500082 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1479 18 16726822 16728951 Lal22g0147 22 921451 927850 LSH
Lal3g1179 3 17089870 17093446 Lal18g1479 18 16726822 16728951 PCT
Lal18g1479 18 16726822 16728951 Lal3g1179 3 17089870 17093446 PCT