Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1478 ATGATGTCAAAGGGAGAAACATATAAAGGGAGGTGGAAACCAGAAGAAGATGAAATTTTGATAGCATATGTTAACAAGCATGGGCTGAATGATATACAAAATATTACAGGACTCAACCGTTCTAAAGAAAGCTGCAAGATTCGATGGACTAACTATCTTAACCCACGTTTGAATATGGTTCCATTTACTCCACAAGAAGAGCTTCAAATCATTAACCTCCATTCTAGATTTGGTGCCAAATGGAATCTAATTGCATCAGAGTTTCCCGGACGATCCTGCCGCGATATAAGATACTTTTGGAAATCAAAGGATTTTCAAAGAAGACTAAAAAGCATGCATGAGCAAGTTTATGTCTCACAAGCTGCAAGCAATCCTCATACAATTGGAAAAAGTAGCAGCATCTTGGCTCATGGTTCAGGCTCATCTCAGTTACCAATTGTGTATCCTAATCCTGATATCGACCAATACAATATCAACAATGCGCAGCTTCCTTCACTAACAGATATACAAAGTGAACAAGGTAGCAACAACAGTGGTGTTTCTGGTAATGAGCAAGTGGATTCAGATTCTGAAGAAAGTTTATATAGAGATGCTATGAGATTTCTAAAAGACTGA 615 0.3789 MMSKGETYKGRWKPEEDEILIAYVNKHGLNDIQNITGLNRSKESCKIRWTNYLNPRLNMVPFTPQEELQIINLHSRFGAKWNLIASEFPGRSCRDIRYFWKSKDFQRRLKSMHEQVYVSQAASNPHTIGKSSSILAHGSGSSQLPIVYPNPDIDQYNINNAQLPSLTDIQSEQGSNNSGVSGNEQVDSDSEESLYRDAMRFLKD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1478 204 SMART sant 8 55 IPR001005 -
Lal18g1478 204 SMART sant 58 106 IPR001005 -
Lal18g1478 204 Gene3D - 8 58 - -
Lal18g1478 204 MobiDBLite consensus disorder prediction 169 188 - -
Lal18g1478 204 MobiDBLite consensus disorder prediction 169 193 - -
Lal18g1478 204 ProSiteProfiles Myb-like domain profile. 54 102 IPR001005 -
Lal18g1478 204 PANTHER TRANSCRIPTION FACTOR MYB104-RELATED 7 127 - -
Lal18g1478 204 CDD SANT 11 53 IPR001005 -
Lal18g1478 204 SUPERFAMILY Homeodomain-like 8 100 IPR009057 -
Lal18g1478 204 ProSiteProfiles Myb-like domain profile. 4 53 IPR001005 -
Lal18g1478 204 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 127 - -
Lal18g1478 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lal18g1478 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 110 IPR017930 -
Lal18g1478 204 Gene3D - 61 128 - -
Lal18g1478 204 CDD SANT 61 101 IPR001005 -
Lal18g1478 204 Pfam Myb-like DNA-binding domain 12 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1478 Lal-Chr18 16724391 16725302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1478 9 112 MYB Transcription Factor Family AT5G10280 44.860 6.08e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g1478 Myb_DNA-bind_6 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1478 K09422 - mnt:21393781 109.768