Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1474 ATGGGAAACTACTGTAATAAACCAGTTGCTCATGTTTCTTCAACAAGTATTGTTGTGCTTGGGTTTCTAGGATTGAATGATCAAAGTCAACTAAGTCAACCCAATGCCTTGCTTAACACACAACATGATGCAACAGACTCTAGCCTCAAAGCTAGTCAACATAAGTCAGTGGCCCATCTTGACCGAGACAACACGGTCAGATGGCCTAGACGTGATTCAGACAATTTGGCCAAGGCAGCAGGCCAAGACTTGGACAACAAGGTCAGCAGGCCAACCAATGGCCTAGCCAGATGCACCAGCCAGGCACAGGCTGACCAAAGTCAGGCGCACCATTTGGCTTTGTTAGGGTTGTTGGGAGATTGTTTAGCTTTTCTTTTCTTGTTCTTTAATGGATTACTTGTTTCTCAAGTAACCATTAAGCTCATCATGTTATGTTCTAGACTATATGGAAATTTGGATCAGGATTGGAGCATTGGTATAGGAAGTACAAAGTCTCAAAGTAAGGCAAAGCATAATTCAAATTCTTCTGAACTAAAAGCTGATTTGCAAATTTCAGCACCAAATGTTGACAAATCCATCTCCAATAACCTTAAGTCCTTCACCTTCAATGATCTAAAGGAGGCCACGAAGAACTTCCGGCAAGAAAATTTGATTGGGGAGGGAGGCTTTGGGTTTGTAATCAAAGGATGGATAGATGAGAACACCTATGCTCCTACAAAATCAGGGTCTGGGATTGTAGTGGCCATTAAGAAGCTTAAGCCAGAAAGCTTTCAAGGCCACAAGCAATGGCTTGCTGAAGTCAATTATCTAGGGAAGCTTCACCATGAAAATCTAGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAATAGGCTTCTAGTTTATGAGTTTATGCAAAAGGGAAGTTTAGAAAATCATTTATTCAGAAAAGGTGTTCAACCCATACCATGGGTTACAAGGGTCAATATTGCAATTGATGTGGCAAAAGGAGTAGCATTCTTACATGCCCTTGATGCAAATGTAATCTACCGCGATTTAAAGGCTTCTAACATCCTACTTGATCCGGATTTCAATGCGAAGCTTTCAGATTTCGGGTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCATGGTTATGCTGCACCAGAATATATAGCTACAGGCCATTTGACCCCAAAGAGTGATGTATACAGCTTCGGTGTTGTCTTGTTAGAGTTACTAACCGGAAGGCGTGTGGTTGAAGATGAGAGAAGTGGATTTTCGGAAAAAACATTGGTGGATTGGGCATGGCATTTCCTGAGTGATACAAGAAGAATTTTGAGAATCATGGATTCCAGATTGGGTGGTCAATATTCCAAGAAAGGAGCTCAAGCTGCAGCTGCACTTACATTGCAATGCCTTGATATTGATCCCAAACTTAGACCATCCATGGTAAATGTTGTTGCTGCATTGGAAGCACTCCGTTCCTCGAATTCAATCCCAAGGACCCCAAAATGTGAGATTCTTGCAACCAAACATTCTAGTCATTCTCAAAATTGCAACACACTATAA 1578 0.4151 MGNYCNKPVAHVSSTSIVVLGFLGLNDQSQLSQPNALLNTQHDATDSSLKASQHKSVAHLDRDNTVRWPRRDSDNLAKAAGQDLDNKVSRPTNGLARCTSQAQADQSQAHHLALLGLLGDCLAFLFLFFNGLLVSQVTIKLIMLCSRLYGNLDQDWSIGIGSTKSQSKAKHNSNSSELKADLQISAPNVDKSISNNLKSFTFNDLKEATKNFRQENLIGEGGFGFVIKGWIDENTYAPTKSGSGIVVAIKKLKPESFQGHKQWLAEVNYLGKLHHENLVKLIGYCSDGKNRLLVYEFMQKGSLENHLFRKGVQPIPWVTRVNIAIDVAKGVAFLHALDANVIYRDLKASNILLDPDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYIATGHLTPKSDVYSFGVVLLELLTGRRVVEDERSGFSEKTLVDWAWHFLSDTRRILRIMDSRLGGQYSKKGAQAAAALTLQCLDIDPKLRPSMVNVVAALEALRSSNSIPRTPKCEILATKHSSHSQNCNTL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1474 525 SMART serkin_6 212 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1474 525 CDD STKc_IRAK 218 496 - -
Lal18g1474 525 PANTHER TYROSINE KINASE FAMILY PROTEIN 158 518 - -
Lal18g1474 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Lal18g1474 525 SUPERFAMILY Protein kinase-like (PK-like) 190 494 IPR011009 -
Lal18g1474 525 ProSitePatterns Protein kinases ATP-binding region signature. 218 251 IPR017441 GO:0005524
Lal18g1474 525 Gene3D Phosphorylase Kinase; domain 1 186 297 - -
Lal18g1474 525 PANTHER OS01G0588500 PROTEIN-RELATED 158 518 - -
Lal18g1474 525 Gene3D Transferase(Phosphotransferase) domain 1 298 514 - -
Lal18g1474 525 ProSiteProfiles Protein kinase domain profile. 212 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1474 525 Pfam Protein tyrosine and serine/threonine kinase 215 492 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1474 Lal-Chr18 16705106 16709046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1474 190 493 Glycoside Hydrolase AT3G07070 51.456 4.96e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal18g1474 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1474 - - gmx:102664409 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0403 5 3990144 3994033 Lal18g1474 18 16705106 16709046 PCT
Lal18g1474 18 16705106 16709046 Lal5g0403 5 3990144 3994033 PCT