Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1473 ATGAGTCAGCCTAAAATTAAGCGCCGAGTTGGTAAATATGAGGTAGGGAGGACCATTGGTGAGGGAACATTTGCAAAGGTGAAATTTGCCAGGAACTCTGAGACAGGGGAGCCTGTGGCTCTCAAAATTCTCGACAAGGAGAAAGTTCTCAAGCACAAGATGGCTGAGCAGATCAGAAGGGAAATAGCTACCATGAAGTTAATCAAGCATCCAAATGTTGTTCAGCTATATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTCTGGAGTTTGTGACTGGGGGAGAGCTCTTTGACAAAATTGTAAATCATGGACGGATGAGTGAAAATGAAACACGTAGATATTTCCAACAGCTTATAAATGCTGTTGATTATTGTCATAGCCGGGGAGTCTATCACAGAGATCTAAAGCCAGAGAATCTGCTATTAGATACTTACGGGAACCTTAAAGTTTCTGACTTTGGTTTAAGTGCTCTCTCTCAACAAGTTAGGGCTGATGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCCGAGGTTCTTAATGATAGAGGCTATGACGGGGCAACTGCAGATTTATGGTCATGCGGGGTGATTCTCTTTGTACTGGTTGCAGGTTACTTGCCTTTCGATGATCCTAACCTTATGAACTTGTATAAAAAAATTTCAGGTGCTGAATTTACTTGCCCCCCATGGCTTTCTTTCAGTGCTAGGAAATTGATATCTCGAATCTTGGATCCCAATCCCGTGACTCGTATCACTATAACTGAGATATTGGATGATGAATGGTTTAAGATAGATTATAAGCCTCCGGTCTTCATGGAGAAAGCGGAAACCAGCCTGAATGATGTAGAAGCTGTCTTTAAAGATTGCGAAAATCACCATGTGACAGAGAAGAAGGAACAGCAACCGACATCCATGAATGCTTTCAAGTTAATTTCCATGTCCAAAGGGCTAAACCTTGAAAACTTGTTTGAAGATCAGGGATTTAAAAGGGAAACAAGATTCACATCAAGATCCTCTGCTAATGAGATAATCAACAAGATTGAAGAAGCTGCGAAACCTCTTGGATTTGATGTTCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAATGTTTCCACAGAGATATTTCAAGTGGCACCCTCTCTTCACATGGTTGAGTTACGGAAAGCGAAAGGTGATACATTGGAGTTCCATAAGTTTTACAAAAATCTTTCAACATGCTTGGAGGATGTTGTTTGGAAAACAGAAGATGATATGCAAACACAAGAAACAAAGTGA 1323 0.4051 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREIATMKLIKHPNVVQLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENETRRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRADGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISGAEFTCPPWLSFSARKLISRILDPNPVTRITITEILDDEWFKIDYKPPVFMEKAETSLNDVEAVFKDCENHHVTEKKEQQPTSMNAFKLISMSKGLNLENLFEDQGFKRETRFTSRSSANEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVSTEIFQVAPSLHMVELRKAKGDTLEFHKFYKNLSTCLEDVVWKTEDDMQTQETK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1473 440 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1473 440 SUPERFAMILY Protein kinase-like (PK-like) 9 309 IPR011009 -
Lal18g1473 440 Gene3D Kinase associated domain 1, KA1 305 429 - -
Lal18g1473 440 Coils Coil 278 298 - -
Lal18g1473 440 Gene3D Transferase(Phosphotransferase) domain 1 93 274 - -
Lal18g1473 440 Pfam NAF domain 308 366 IPR004041 GO:0007165
Lal18g1473 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lal18g1473 440 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Lal18g1473 440 PANTHER - 2 431 - -
Lal18g1473 440 CDD CIPK_C 312 420 - -
Lal18g1473 440 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Lal18g1473 440 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lal18g1473 440 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 2 431 - -
Lal18g1473 440 CDD STKc_SnRK3 12 267 - -
Lal18g1473 440 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal18g1473 440 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1473 Lal-Chr18 16695232 16700994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1473 5 390 CBL-interacting serine-threonine protein kinases AT2G26980 82.429 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal18g1473 Pkinase 9.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1473 - - gmx:100794566 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1473 18 16695232 16700994 Lal22g0152 22 941500 947110 LSH