Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1468 ATGGCCAAGAAGCGAAAGCTCCGATCCTCCGACCCCGAACCTGAACCCCAGGATATACAGGACCACCAAACCCTAGAAGGAGCCCAGGACCACGTGCCCGTGGAGGAGGAGAACCCAGAGGTAGAACAACAACGAGACGAAGACGAAGATGAAGATGAAGATGAAACCTTAGAAGATAAGGAACAGGATACTGAACCTTCAAAGGATGATGATGCTGCTGATGCTACAGCATCTGAATCAACTAAGGTTGAAGTGAACGGTTTGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGATCTTGATTTGGAAGATGAACCTGTTGAGAAGCTTCTAGAACCTTTCACTAAGGAGCAATTACACGCTCTTGTTAAGCAAGCCGTTGAGAAATACCCTGATTTCGTCGAGAACGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGCAAAATCTTCATCCACGGCCTCGGTTGGGACGCTACCGCCGAAACACTAACCTCCGTGTTCTCTAAATACGGCGAAATCGAAGACTGCAAAGCTGTCACTGATAAGCTTTCTGGGAAATCCAAAGGCTATGCTTTTATCCTTTTCAAACATCGTAGTGGGGCCCGCAGAGCGCTGAAGCAGCCACAGAAGAATATTGGTAACCGAACCACTTCGTGTCAATTGGCTTCTGCTGGACCTGTTCCGGCGCCACCACCTGTGACTCCTGCTGTTTCGGAGTATACTCAAAGGAAGATTTTTGTGAGCAATGTGAGTGCTGATATTGATCCTCAGAAGCTGCTTGAGTTCTTCAGGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGTCTTGATAAGCAGACTGGGAAGCCGAAAGGTTTTGCGCTTTTCGTCTATAAATCGGTTGATAGTGCTAAGAAGGCTCTTGAAGATCCCCATAAGCCGTTTGAGGGGCATGTTTTGTATTGTCAAAAGGCTGTTGATGGACCTAAGGGGAAACCAGGTTATCATCAGCAACCACATCACCAACACCATCAGCACCAGCATTATTCCCAACATCATCACCAGACCCACTATCAAAGGAAGGAGAAGAACAGGTATTCTTCTGGGGGGCCACCACATGGTGGTGGTGGGCACTTGATGGCACCATCAGGTCCTGCTGTAGGAGGTTACAATACGGGAGTGCCTGCCGCTCAGGGGCTGAATCCGGTGCTTGGGCAAGCGATATCGGCTTTGCTTACAACCCAAGGAGCTGGGTTGGGATTTGGGAACCTGCTTGGAGGTCTTGCTGGTGCACCTGTGAATCAGTCTGTTCCACAAGCTGGCTATGGTAATCAGCCTGCTATGAACTATGGGAACCAGCAGGTGATGCCACAGGGATACCAAAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGGCCTCACCCTGGTGCTGGTGCCCCTTACATGGGTCATTAG 1437 0.5003 MAKKRKLRSSDPEPEPQDIQDHQTLEGAQDHVPVEEENPEVEQQRDEDEDEDEDETLEDKEQDTEPSKDDDAADATASESTKVEVNGLEEEEEEEEEEDLDLEDEPVEKLLEPFTKEQLHALVKQAVEKYPDFVENVRQLADVDPAHRKIFIHGLGWDATAETLTSVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGARRALKQPQKNIGNRTTSCQLASAGPVPAPPPVTPAVSEYTQRKIFVSNVSADIDPQKLLEFFRQFGEVEDGPLGLDKQTGKPKGFALFVYKSVDSAKKALEDPHKPFEGHVLYCQKAVDGPKGKPGYHQQPHHQHHQHQHYSQHHHQTHYQRKEKNRYSSGGPPHGGGGHLMAPSGPAVGGYNTGVPAAQGLNPVLGQAISALLTTQGAGLGFGNLLGGLAGAPVNQSVPQAGYGNQPAMNYGNQQVMPQGYQNPQMGQSSGVRPHPGAGAPYMGH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1468 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 314 IPR000504 GO:0003723
Lal18g1468 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 217 IPR000504 GO:0003723
Lal18g1468 478 SUPERFAMILY RNA-binding domain, RBD 136 226 IPR035979 GO:0003676
Lal18g1468 478 MobiDBLite consensus disorder prediction 330 354 - -
Lal18g1468 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 225 IPR000504 GO:0003723
Lal18g1468 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 465 - -
Lal18g1468 478 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 465 - -
Lal18g1468 478 Gene3D - 234 372 IPR012677 -
Lal18g1468 478 SUPERFAMILY RNA-binding domain, RBD 228 338 IPR035979 GO:0003676
Lal18g1468 478 CDD RRM_RBM24_RBM38_like 244 319 - -
Lal18g1468 478 MobiDBLite consensus disorder prediction 1 105 - -
Lal18g1468 478 MobiDBLite consensus disorder prediction 455 478 - -
Lal18g1468 478 Coils Coil 78 105 - -
Lal18g1468 478 CDD RRM_RBM24_RBM38_like 148 223 - -
Lal18g1468 478 MobiDBLite consensus disorder prediction 61 77 - -
Lal18g1468 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 327 IPR000504 GO:0003723
Lal18g1468 478 MobiDBLite consensus disorder prediction 1 39 - -
Lal18g1468 478 MobiDBLite consensus disorder prediction 40 60 - -
Lal18g1468 478 SMART rrm1_1 149 221 IPR000504 GO:0003723
Lal18g1468 478 SMART rrm1_1 245 317 IPR000504 GO:0003723
Lal18g1468 478 MobiDBLite consensus disorder prediction 86 105 - -
Lal18g1468 478 MobiDBLite consensus disorder prediction 320 378 - -
Lal18g1468 478 Gene3D - 29 230 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1468 Lal-Chr18 16651433 16655527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1468 223 331 C2H2 Transcription Factor Family AT2G19380 30.275 2.22e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1468 K12741 - gmx:100792637 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1468 18 16651433 16655527 Lal22g0156 22 967588 969930 LSH
Lal18g1468 18 16651433 16655527 Lal6g0162 6 1153064 1154521 LSH