Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1439 ATGATAGGGTTTGAAGGGAACAGTTGCAGTGAGTTTTCTTCAATGGACATGATGAACATTGAAACTAATAGGAGGGAGTTTCTTTCTATGCCTCTGAGCAACAACAACAACAACAACAGCTCTGGTACTCAAGGTCATAACTACAGACAGCATCAGGACCACACCACCAACAACAACAACAGTTGCAGTAGTAGTAGTGTGAGGGATAAAATCATGGCACATCCTCTCTTTACTCGTTTGTTGTCATCTTACATCAATTGCCTCAAGGTTGGAGCACCACCTGAAGTGGTGGCTAGGTTAGAGGAGATATGTTCCAAATGTGATGAATCATCACATTACAGGACAGGAAGTGGTTCCATAGGTGAGGATCCATCACTGGACCAGTTCATGGAGGCATACTGTGAGATGCTTATCAAGTATGAGCAAGAGCTCTCAAAACCCTTCAAAGAAGCCATTCTTTTCTTTTCATCAGTTGAATCTCAGCTTAAGGCTCTAGCAGTTTCAACAACAGACTTTGGTGAAAGTGGAGCATCTTCACAAAATAGGGCTGATATTGGTCATGAACACAACATGAATACAGAAGCTGAAGAGAGAGAACTAAAAGTGCAGCTTTTGCAAAAGTACAGTGGATACCTGGGTGGTCTGAAGAAAGAATTTATGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTAGGCAGCAGCTACTAGAATGGTGGAACAGACATTACAAATGGCCTTATCCATCGGAATCTCAGAAGCAGGCACTAGCAGAATCCACAAGCCTAGATCTGAAGCAGATAAACAATTGGTTCATAAATAGGAGAAAACGTCATTGGAAGCCTTCAGAGGACATGCAATATGCAGTGATGGATGCAACAAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGCCATGCCTATGCTTCTGTAA 948 0.4177 MIGFEGNSCSEFSSMDMMNIETNRREFLSMPLSNNNNNNSSGTQGHNYRQHQDHTTNNNNSCSSSSVRDKIMAHPLFTRLLSSYINCLKVGAPPEVVARLEEICSKCDESSHYRTGSGSIGEDPSLDQFMEAYCEMLIKYEQELSKPFKEAILFFSSVESQLKALAVSTTDFGESGASSQNRADIGHEHNMNTEAEERELKVQLLQKYSGYLGGLKKEFMKKKKNGKLPKEARQQLLEWWNRHYKWPYPSESQKQALAESTSLDLKQINNWFINRRKRHWKPSEDMQYAVMDATNYYMENVMCKPFPMDAMPMLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1439 315 Pfam ELK domain 199 220 IPR005539 GO:0003677
Lal18g1439 315 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 306 - -
Lal18g1439 315 SMART KNOX2_2 116 167 IPR005541 GO:0003677|GO:0005634
Lal18g1439 315 Pfam KNOX1 domain 67 107 IPR005540 GO:0003677|GO:0005634
Lal18g1439 315 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Lal18g1439 315 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Lal18g1439 315 Pfam KNOX2 domain 119 165 IPR005541 GO:0003677|GO:0005634
Lal18g1439 315 SUPERFAMILY Homeodomain-like 221 293 IPR009057 -
Lal18g1439 315 SMART KNOX1_2 65 109 IPR005540 GO:0003677|GO:0005634
Lal18g1439 315 Gene3D - 217 294 - -
Lal18g1439 315 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Lal18g1439 315 SMART HOX_1 221 286 IPR001356 GO:0003677
Lal18g1439 315 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Lal18g1439 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 306 - -
Lal18g1439 315 SMART ELK_2 199 220 IPR005539 GO:0003677
Lal18g1439 315 CDD homeodomain 231 283 IPR001356 GO:0003677
Lal18g1439 315 MobiDBLite consensus disorder prediction 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1439 Lal-Chr18 16447858 16451709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1439 67 309 Homeobox Transcription Factor Family AT1G62360 65.098 1.48e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal18g1439 KNOX2 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1439 - - gmx:100791704 470.7